Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT5G38470.1 | CDX72742 | AT4G38630.1 | 20059542 |
AT5G38470.1 | CDX90286 | AT4G38630.1 | 20059542 |
AT5G38470.1 | CDY12093 | AT4G38630.1 | 20059542 |
AT5G38470.1 | CDY22415 | AT4G38630.1 | 20059542 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY01661 | Canola | cytosol | 97.63 | 98.15 |
Bra028184.1-P | Field mustard | cytosol | 95.0 | 95.5 |
CDY58121 | Canola | cytosol | 91.32 | 90.36 |
CDX67404 | Canola | cytosol | 89.21 | 88.74 |
AT5G38470.1 | Thale cress | cytosol | 86.58 | 87.04 |
PGSC0003DMT400062159 | Potato | cytosol | 71.32 | 70.21 |
PGSC0003DMT400032941 | Potato | cytosol | 71.84 | 70.0 |
Solyc02g063130.2.1 | Tomato | cytosol, extracellular | 70.53 | 69.97 |
GSMUA_Achr9P15580_001 | Banana | cytosol | 40.26 | 69.23 |
Solyc02g085840.2.1 | Tomato | cytosol | 69.21 | 67.61 |
CDX74251 | Canola | cytosol | 71.32 | 67.58 |
CDX91998 | Canola | cytosol | 69.47 | 65.51 |
GSMUA_Achr5P05860_001 | Banana | cytosol | 66.05 | 64.03 |
GSMUA_Achr3P07380_001 | Banana | cytosol | 65.53 | 60.88 |
Os02t0465000-00 | Rice | cytosol | 14.74 | 60.87 |
Os06t0264300-01 | Rice | cytosol, nucleus, plastid | 63.95 | 58.84 |
KXG35597 | Sorghum | cytosol | 60.53 | 57.79 |
TraesCS7D01G209100.1 | Wheat | cytosol | 61.58 | 57.49 |
KXG19738 | Sorghum | cytosol | 61.58 | 57.35 |
Zm00001d045665_P003 | Maize | cytosol | 61.84 | 57.32 |
TraesCS5B01G204000.1 | Wheat | cytosol | 59.47 | 57.22 |
TraesCS7B01G113500.1 | Wheat | cytosol | 61.05 | 57.0 |
TraesCS7A01G206300.1 | Wheat | cytosol | 61.05 | 56.86 |
TraesCS5A01G204200.1 | Wheat | cytosol | 58.95 | 56.71 |
TraesCS5D01G211900.1 | Wheat | cytosol | 58.95 | 56.71 |
Os08t0430200-01 | Rice | cytosol | 60.53 | 56.65 |
Zm00001d037326_P001 | Maize | cytosol | 59.74 | 56.47 |
Os09t0407200-01 | Rice | cytosol | 57.63 | 55.87 |
GSMUA_Achr9P15590_001 | Banana | cytosol | 20.79 | 55.63 |
HORVU5Hr1G060920.1 | Barley | mitochondrion | 61.84 | 54.27 |
CDY52848 | Canola | cytosol | 50.0 | 52.92 |
CDY33351 | Canola | cytosol, nucleus, plastid | 49.74 | 52.5 |
CDX81753 | Canola | cytosol, nucleus, plastid | 50.0 | 52.34 |
CDY35071 | Canola | cytosol | 48.42 | 49.86 |
HORVU7Hr1G042100.8 | Barley | cytosol | 54.21 | 49.05 |
Zm00001d005732_P001 | Maize | cytosol | 56.32 | 48.09 |
CDX79333 | Canola | cytosol | 48.42 | 47.42 |
CDX67983 | Canola | plastid | 48.68 | 43.22 |
Zm00001d020419_P003 | Maize | cytosol | 50.79 | 42.23 |
CDY26493 | Canola | cytosol | 35.53 | 38.03 |
CDY26494 | Canola | nucleus | 26.84 | 37.92 |
CDX69474 | Canola | cytosol | 36.32 | 37.81 |
CDX69472 | Canola | cytosol | 33.68 | 36.06 |
CDY26496 | Canola | cytosol | 33.68 | 35.65 |
CDY26495 | Canola | cytosol | 13.68 | 27.37 |
CDX69473 | Canola | cytosol | 34.21 | 19.73 |
Protein Annotations
Gene3D:1.10.10.540 | Gene3D:1.10.8.10 | MapMan:19.2.4.4.1 | Gene3D:3.10.20.90 | GO:A0A078CCG9 | EnsemblPlants:CDX74522 |
ProteinID:CDX74522 | ProteinID:CDX74522.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003684 |
GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006289 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0043161 | EnsemblPlantsGene:GSBRNA2T00114435001 | InterPro:IPR000626 |
InterPro:IPR015940 | InterPro:IPR036353 | PFAM:PF00240 | PFAM:PF00627 | PFAM:PF09280 | PRINTS:PR01839 |
PFscan:PS50030 | PFscan:PS50053 | PANTHER:PTHR10621 | PANTHER:PTHR10621:SF7 | InterPro:Rad23 | SMART:SM00165 |
SMART:SM00213 | SMART:SM00727 | SUPFAM:SSF101238 | SUPFAM:SSF46934 | SUPFAM:SSF54236 | InterPro:STI1_HS-bd |
TIGRFAMs:TIGR00601 | InterPro:UBA | InterPro:UBA-like_sf | UniParc:UPI0004EEC104 | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom |
InterPro:XPC-bd | InterPro:XPC-bd_sf | SEG:seg | : | : | : |
Description
BnaA04g08670D
Coordinates
chrLK031801:-:1122945..1125763
Molecular Weight (calculated)
40436.7 Da
IEP (calculated)
4.268
GRAVY (calculated)
-0.247
Length
380 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIFVKTLKG TNFEIEVNPA DTISDTKRRI ESHQGAQYPA AQQMLIHQGK VLKDETTLEE NNVVENSFIV IMLSKAKVSS SGASTASAPA PAPAPQAQPA
101: QTVATPQVAA PTVSVPEPTS VAATVAAPSA AAASTQTDVY GQAASNLVAG NTLESTVQQI LDMGGGSWDR DTVVRALRAA FNNPERAVEY LYSGIPAQAE
201: IPPAPQAPAT GGQAANPLAQ EAAPVPATGG PNANPLDLFP QGMPAADAGA GAGNLDFLRN SQQFQALRAM VQANPQILQP MLQELGKQNP QLVRLIQEHQ
301: ADFLRLINEP VEGEENAMEQ LEAAMPQAVT VTPEEREAIE RLEAMGFDRA MVLEVFFACN KNEELAANYL LDHMHEFEEQ
101: QTVATPQVAA PTVSVPEPTS VAATVAAPSA AAASTQTDVY GQAASNLVAG NTLESTVQQI LDMGGGSWDR DTVVRALRAA FNNPERAVEY LYSGIPAQAE
201: IPPAPQAPAT GGQAANPLAQ EAAPVPATGG PNANPLDLFP QGMPAADAGA GAGNLDFLRN SQQFQALRAM VQANPQILQP MLQELGKQNP QLVRLIQEHQ
301: ADFLRLINEP VEGEENAMEQ LEAAMPQAVT VTPEEREAIE RLEAMGFDRA MVLEVFFACN KNEELAANYL LDHMHEFEEQ
001: MKIFVKTLSG SNFEIEVKPA DKVSDVKTAI ETVKGAEYPA AKQMLIHQGK VLKDETTLEE NNVVENSFIV IMLSKTKASP SGASTASAPA PSATQPQTVA
101: TPQVSAPTAS VPVPTSGTAT AAAPATAASV QTDVYGQAAS NLVAGTTLES TVQQILDMGG GSWDRDTVVR ALRAAFNNPE RAVEYLYSGI PAQAEIPPVA
201: QAPATGEQAA NPLAQPQQAA APAAATGGPN ANPLNLFPQG MPAADAGAGA GNLDFLRNSQ QFQALRAMVQ ANPQILQPML QELGKQNPQL VRLIQEHQAD
301: FLRLINEPVE GEENVMEQLE AAMPQAVTVT PEEREAIERL EGMGFDRAMV LEVFFACNKN EELAANYLLD HMHEFEDQ
101: TPQVSAPTAS VPVPTSGTAT AAAPATAASV QTDVYGQAAS NLVAGTTLES TVQQILDMGG GSWDRDTVVR ALRAAFNNPE RAVEYLYSGI PAQAEIPPVA
201: QAPATGEQAA NPLAQPQQAA APAAATGGPN ANPLNLFPQG MPAADAGAGA GNLDFLRNSQ QFQALRAMVQ ANPQILQPML QELGKQNPQL VRLIQEHQAD
301: FLRLINEPVE GEENVMEQLE AAMPQAVTVT PEEREAIERL EGMGFDRAMV LEVFFACNKN EELAANYLLD HMHEFEDQ
Arabidopsis Description
RAD23DUbiquitin receptor RAD23d [Source:UniProtKB/Swiss-Prot;Acc:Q84L30]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.