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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY01661 Canola cytosol 97.63 98.15
Bra028184.1-P Field mustard cytosol 95.0 95.5
CDY58121 Canola cytosol 91.32 90.36
CDX67404 Canola cytosol 89.21 88.74
AT5G38470.1 Thale cress cytosol 86.58 87.04
PGSC0003DMT400062159 Potato cytosol 71.32 70.21
PGSC0003DMT400032941 Potato cytosol 71.84 70.0
Solyc02g063130.2.1 Tomato cytosol, extracellular 70.53 69.97
GSMUA_Achr9P15580_001 Banana cytosol 40.26 69.23
Solyc02g085840.2.1 Tomato cytosol 69.21 67.61
CDX74251 Canola cytosol 71.32 67.58
CDX91998 Canola cytosol 69.47 65.51
GSMUA_Achr5P05860_001 Banana cytosol 66.05 64.03
GSMUA_Achr3P07380_001 Banana cytosol 65.53 60.88
Os02t0465000-00 Rice cytosol 14.74 60.87
Os06t0264300-01 Rice cytosol, nucleus, plastid 63.95 58.84
KXG35597 Sorghum cytosol 60.53 57.79
TraesCS7D01G209100.1 Wheat cytosol 61.58 57.49
KXG19738 Sorghum cytosol 61.58 57.35
Zm00001d045665_P003 Maize cytosol 61.84 57.32
TraesCS5B01G204000.1 Wheat cytosol 59.47 57.22
TraesCS7B01G113500.1 Wheat cytosol 61.05 57.0
TraesCS7A01G206300.1 Wheat cytosol 61.05 56.86
TraesCS5A01G204200.1 Wheat cytosol 58.95 56.71
TraesCS5D01G211900.1 Wheat cytosol 58.95 56.71
Os08t0430200-01 Rice cytosol 60.53 56.65
Zm00001d037326_P001 Maize cytosol 59.74 56.47
Os09t0407200-01 Rice cytosol 57.63 55.87
GSMUA_Achr9P15590_001 Banana cytosol 20.79 55.63
HORVU5Hr1G060920.1 Barley mitochondrion 61.84 54.27
CDY52848 Canola cytosol 50.0 52.92
CDY33351 Canola cytosol, nucleus, plastid 49.74 52.5
CDX81753 Canola cytosol, nucleus, plastid 50.0 52.34
CDY35071 Canola cytosol 48.42 49.86
HORVU7Hr1G042100.8 Barley cytosol 54.21 49.05
Zm00001d005732_P001 Maize cytosol 56.32 48.09
CDX79333 Canola cytosol 48.42 47.42
CDX67983 Canola plastid 48.68 43.22
Zm00001d020419_P003 Maize cytosol 50.79 42.23
CDY26493 Canola cytosol 35.53 38.03
CDY26494 Canola nucleus 26.84 37.92
CDX69474 Canola cytosol 36.32 37.81
CDX69472 Canola cytosol 33.68 36.06
CDY26496 Canola cytosol 33.68 35.65
CDY26495 Canola cytosol 13.68 27.37
CDX69473 Canola cytosol 34.21 19.73
Protein Annotations
Gene3D:1.10.10.540Gene3D:1.10.8.10MapMan:19.2.4.4.1Gene3D:3.10.20.90GO:A0A078CCG9EnsemblPlants:CDX74522
ProteinID:CDX74522ProteinID:CDX74522.1GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003684
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0006139GO:GO:0006259GO:GO:0006289GO:GO:0006950GO:GO:0008150GO:GO:0008152
GO:GO:0009056GO:GO:0009987GO:GO:0019538GO:GO:0043161EnsemblPlantsGene:GSBRNA2T00114435001InterPro:IPR000626
InterPro:IPR015940InterPro:IPR036353PFAM:PF00240PFAM:PF00627PFAM:PF09280PRINTS:PR01839
PFscan:PS50030PFscan:PS50053PANTHER:PTHR10621PANTHER:PTHR10621:SF7InterPro:Rad23SMART:SM00165
SMART:SM00213SMART:SM00727SUPFAM:SSF101238SUPFAM:SSF46934SUPFAM:SSF54236InterPro:STI1_HS-bd
TIGRFAMs:TIGR00601InterPro:UBAInterPro:UBA-like_sfUniParc:UPI0004EEC104InterPro:Ubiquitin-like_domsfInterPro:Ubiquitin_dom
InterPro:XPC-bdInterPro:XPC-bd_sfSEG:seg:::
Description
BnaA04g08670D
Coordinates
chrLK031801:-:1122945..1125763
Molecular Weight (calculated)
40436.7 Da
IEP (calculated)
4.268
GRAVY (calculated)
-0.247
Length
380 amino acids
Sequence
(BLAST)
001: MKIFVKTLKG TNFEIEVNPA DTISDTKRRI ESHQGAQYPA AQQMLIHQGK VLKDETTLEE NNVVENSFIV IMLSKAKVSS SGASTASAPA PAPAPQAQPA
101: QTVATPQVAA PTVSVPEPTS VAATVAAPSA AAASTQTDVY GQAASNLVAG NTLESTVQQI LDMGGGSWDR DTVVRALRAA FNNPERAVEY LYSGIPAQAE
201: IPPAPQAPAT GGQAANPLAQ EAAPVPATGG PNANPLDLFP QGMPAADAGA GAGNLDFLRN SQQFQALRAM VQANPQILQP MLQELGKQNP QLVRLIQEHQ
301: ADFLRLINEP VEGEENAMEQ LEAAMPQAVT VTPEEREAIE RLEAMGFDRA MVLEVFFACN KNEELAANYL LDHMHEFEEQ
Best Arabidopsis Sequence Match ( AT5G38470.1 )
(BLAST)
001: MKIFVKTLSG SNFEIEVKPA DKVSDVKTAI ETVKGAEYPA AKQMLIHQGK VLKDETTLEE NNVVENSFIV IMLSKTKASP SGASTASAPA PSATQPQTVA
101: TPQVSAPTAS VPVPTSGTAT AAAPATAASV QTDVYGQAAS NLVAGTTLES TVQQILDMGG GSWDRDTVVR ALRAAFNNPE RAVEYLYSGI PAQAEIPPVA
201: QAPATGEQAA NPLAQPQQAA APAAATGGPN ANPLNLFPQG MPAADAGAGA GNLDFLRNSQ QFQALRAMVQ ANPQILQPML QELGKQNPQL VRLIQEHQAD
301: FLRLINEPVE GEENVMEQLE AAMPQAVTVT PEEREAIERL EGMGFDRAMV LEVFFACNKN EELAANYLLD HMHEFEDQ
Arabidopsis Description
RAD23DUbiquitin receptor RAD23d [Source:UniProtKB/Swiss-Prot;Acc:Q84L30]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.