CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72742
CDX90286
CDY12093
CDY22415

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16190.1	CDX72742	AT4G38630.1	20059542
AT1G16190.1	CDX90286	AT4G38630.1	20059542
AT1G16190.1	CDY12093	AT4G38630.1	20059542
AT1G16190.1	CDY22415	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026728.1-P	Field mustard	cytosol	100.0	100.0
CDX81753	Canola	cytosol, nucleus, plastid	88.58	87.6
AT1G16190.1	Thale cress	cytosol	82.17	80.16
HORVU6Hr1G029720.1	Barley	cytosol, mitochondrion, nucleus	11.7	77.78
CDY33351	Canola	cytosol, nucleus, plastid	77.99	77.78
CDY35071	Canola	cytosol	79.11	76.96
KRH09619	Soybean	cytosol, nucleus, plasma membrane	39.0	67.31
Solyc03g117780.2.1	Tomato	cytosol	67.13	65.85
PGSC0003DMT400036871	Potato	cytosol	67.13	65.67
KRH23694	Soybean	cytosol	66.85	65.4
KRH47002	Soybean	cytosol, nucleus, plastid	66.02	65.29
CDX79333	Canola	cytosol	70.47	65.21
VIT_09s0018g01400.t01	Wine grape	cytosol	71.59	62.53
KRH44654	Soybean	cytosol, nucleus, plastid	66.02	62.2
TraesCS6A01G149500.1	Wheat	cytosol	61.84	60.49
Os02t0179300-01	Rice	plasma membrane	62.12	60.43
CDX67983	Canola	plastid	71.87	60.28
TraesCS6D01G138800.2	Wheat	cytosol	61.56	60.22
TraesCS6B01G177400.1	Wheat	cytosol	61.28	59.95
Zm00001d053738_P001	Maize	cytosol	60.72	59.24
EES04633	Sorghum	cytosol	59.89	58.27
GSMUA_Achr1P25580_001	Banana	cytosol	61.56	57.55
GSMUA_Achr7P05130_001	Banana	endoplasmic reticulum	27.58	56.9
HORVU6Hr1G029760.4	Barley	cytosol	53.76	56.43
GSMUA_Achr4P20500_001	Banana	cytosol	61.0	56.3
GSMUA_Achr7P05120_001	Banana	cytosol	39.55	52.01
CDX74522	Canola	cytosol	52.92	50.0
CDY01661	Canola	cytosol	52.65	50.0
CDY58121	Canola	cytosol	52.37	48.96
CDX67404	Canola	cytosol	52.09	48.95
CDX74251	Canola	cytosol	50.7	45.39
CDX91998	Canola	cytosol	50.14	44.66
CDY26493	Canola	cytosol	32.31	32.68
CDX69474	Canola	cytosol	32.87	32.33
CDY26494	Canola	nucleus	23.68	31.6
CDY26496	Canola	cytosol	26.74	26.74
CDX69472	Canola	cytosol	25.35	25.63
CDY26495	Canola	cytosol	13.37	25.26
CDX69473	Canola	cytosol	29.25	15.93

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	GO:A0A078IV15	UniProt:A0A078IV15
EnsemblPlants:CDY52848	ProteinID:CDY52848	ProteinID:CDY52848.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003684	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0043161	EnsemblPlantsGene:GSBRNA2T00008000001
InterPro:IPR000626	InterPro:IPR015940	InterPro:IPR036353	PFAM:PF00240	PFAM:PF00627	PFAM:PF09280
PRINTS:PR01839	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10621	PANTHER:PTHR10621:SF26	InterPro:Rad23
SMART:SM00165	SMART:SM00213	SMART:SM00727	SUPFAM:SSF101238	SUPFAM:SSF46934	SUPFAM:SSF54236
InterPro:STI1_HS-bd	TIGRFAMs:TIGR00601	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0002542C51	InterPro:Ubiquitin-like_domsf
InterPro:Ubiquitin_dom	InterPro:XPC-bd	InterPro:XPC-bd_sf	SEG:seg	:	:

Description

BnaA09g56400DBnaA09g56400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IV15]

Coordinates

chrLK033137:-:15631..18281

Molecular Weight (calculated)

38724.4 Da

IEP (calculated)

4.142

GRAVY (calculated)

-0.406

Length

359 amino acids

Sequence
(BLAST)

001: MKLTVKTLKG SHFEIRVLPT DTIMAVKKNI EDSQSKDNYP CGQQLLIHNG KVLKDETTLV ENKVTEEGFL VVMLSKSKTA SSAGPSSAQP TSTTTSSAMP
101: AAASTTHSIP VPASVSTLAQ EQPAAPSDTN AQAASTLASG SSTEQMVQQI MEMGGGSWDK ETVARALRAA YNNPERAVDY LYSGIPERET VPLTNISGAD
201: LAAPPTSGGP NSSPLDLFPQ EAEAGAGELG TLDFLRGNDQ FQQLRSMVNS NPQILQPMLQ ELGKQNPQLL RLIQENQAEF LQLINEPYEG SDGEMDILDQ
301: PEQEMPHAVN VTPAEQEAIQ RLEAMGFDRA LVIEAFLACD RNEELAANYL LENSADFED

Best Arabidopsis Sequence Match ( AT1G16190.1 )
(BLAST)

001: MKLTVKTLKG SHFEIRVLPT DTIMAVKKNI EDSQSKDNYP CGQQLLIHNG KVLKDETTLV ENKVTEEGFL VVMLSKSKTA SSAGPSSTQP TSTTTSTISS
101: TTLAAPSTTQ SIAVPASNST PVQEQPTAQS DTYGQAASTL VSGSSIEQMV QQIMEMGGGS WDKETVTRAL RAAYNNPERA VDYLYSGIPE TVTIPATNLS
201: GVGSGRELTA PPPSGGPNSS PLDLFPQEAV SDAAGGDLGT LEFLRGNDQF QQLRSMVNSN PQILQPMLQE LGKQNPQLLR LIQENQAEFL QLLNEPYEGS
301: DGDVDIFDQP DQEMPHSVNV TPEEQESIER LEAMGFDRAI VIEAFLSCDR NEELAANYLL EHSADFED

Arabidopsis Description

RAD23ARAD23A [Source:UniProtKB/TrEMBL;Acc:A0A178W4Q3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.