Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- endoplasmic reticulum 4
- extracellular 2
- vacuole 2
- plasma membrane 2
- golgi 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr11P... | |
| GSMUA_Achr2P11290_001 | |
| GSMUA_Achr4P25580_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G16190.1 | GSMUA_Achr11P... | AT4G38630.1 | 20059542 |
| AT1G16190.1 | GSMUA_Achr2P11290_001 | AT4G38630.1 | 20059542 |
| AT1G16190.1 | GSMUA_Achr4P25580_001 | AT4G38630.1 | 20059542 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G029720.1 | Barley | cytosol, mitochondrion, nucleus | 24.71 | 79.63 |
| KRH09619 | Soybean | cytosol, nucleus, plasma membrane | 52.87 | 44.23 |
| GSMUA_Achr9P15580_001 | Banana | cytosol | 44.25 | 34.84 |
| GSMUA_Achr4P20500_001 | Banana | cytosol | 71.26 | 31.88 |
| KRH47002 | Soybean | cytosol, nucleus, plastid | 66.09 | 31.68 |
| GSMUA_Achr1P25580_001 | Banana | cytosol | 68.97 | 31.25 |
| Os02t0179300-01 | Rice | plasma membrane | 64.94 | 30.62 |
| KRH44654 | Soybean | cytosol, nucleus, plastid | 64.94 | 29.66 |
| TraesCS6A01G149500.1 | Wheat | cytosol | 62.07 | 29.43 |
| Zm00001d053738_P001 | Maize | cytosol | 62.07 | 29.35 |
| TraesCS6B01G177400.1 | Wheat | cytosol | 61.49 | 29.16 |
| TraesCS6D01G138800.2 | Wheat | cytosol | 61.49 | 29.16 |
| KRH23694 | Soybean | cytosol | 61.49 | 29.16 |
| HORVU6Hr1G029760.4 | Barley | cytosol | 56.9 | 28.95 |
| Solyc03g117780.2.1 | Tomato | cytosol | 60.34 | 28.69 |
| PGSC0003DMT400036871 | Potato | cytosol | 60.34 | 28.61 |
| EES04633 | Sorghum | cytosol | 60.34 | 28.46 |
| CDY52848 | Canola | cytosol | 56.9 | 27.58 |
| Bra026728.1-P | Field mustard | cytosol | 56.9 | 27.58 |
| CDX81753 | Canola | cytosol, nucleus, plastid | 56.32 | 27.0 |
| AT1G16190.1 | Thale cress | cytosol | 56.9 | 26.9 |
| CDY33351 | Canola | cytosol, nucleus, plastid | 55.17 | 26.67 |
| VIT_09s0018g01400.t01 | Wine grape | cytosol | 62.64 | 26.52 |
| AT1G79650.4 | Thale cress | cytosol | 59.2 | 26.08 |
| Bra026076.1-P | Field mustard | cytosol | 55.17 | 26.02 |
| CDX79333 | Canola | cytosol | 57.47 | 25.77 |
| CDY35071 | Canola | cytosol | 54.6 | 25.75 |
| CDX67983 | Canola | plastid | 57.47 | 23.36 |
| Bra003599.1-P | Field mustard | cytosol, mitochondrion, plasma membrane, plastid | 56.9 | 23.02 |
| GSMUA_Achr5P05860_001 | Banana | cytosol | 51.15 | 22.7 |
| GSMUA_Achr3P07380_001 | Banana | cytosol | 52.3 | 22.25 |
| GSMUA_Achr9P15590_001 | Banana | cytosol | 6.9 | 8.45 |
| GSMUA_Achr7P05120_001 | Banana | cytosol | 9.2 | 5.86 |
Protein Annotations
| Gene3D:1.10.10.540 | Gene3D:1.10.8.10 | MapMan:19.2.4.4.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003684 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006289 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0043161 |
| EnsemblPlantsGene:GSMUA_Achr7G05130_001 | EnsemblPlants:GSMUA_Achr7P05130_001 | EnsemblPlants:GSMUA_Achr7T05130_001 | InterPro:IPR015940 | InterPro:IPR036353 | UniProt:M0TEV3 |
| PFAM:PF00627 | PFAM:PF09280 | PRINTS:PR01839 | PFscan:PS50030 | PANTHER:PTHR10621 | PANTHER:PTHR10621:SF26 |
| InterPro:Rad23 | SMART:SM00165 | SMART:SM00727 | SUPFAM:SSF101238 | SUPFAM:SSF46934 | InterPro:STI1_HS-bd |
| InterPro:UBA | InterPro:UBA-like_sf | UniParc:UPI000295D648 | InterPro:XPC-bd | InterPro:XPC-bd_sf | SEG:seg |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G05130_001]
Coordinates
chr7:+:3836356..3839337
Molecular Weight (calculated)
19751.0 Da
IEP (calculated)
4.354
GRAVY (calculated)
0.048
Length
174 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLILSHLAH IMKINFVLNG LLHKIFPIAE VRNLLSTATT ITSTNTALFP MIIFYPYFLA LRAMVQANPQ ILQPMLQELS KQNPQLLRLI QEHHAEFLQL
101: INEPIEGLEG DMFDQPEQDE MPHTINVTAE EQEAIGRLEA MGFDRASVIE AFLACDRNEQ LAANYLLEHA GDED
101: INEPIEGLEG DMFDQPEQDE MPHTINVTAE EQEAIGRLEA MGFDRASVIE AFLACDRNEQ LAANYLLEHA GDED
001: MKLTVKTLKG SHFEIRVLPT DTIMAVKKNI EDSQSKDNYP CGQQLLIHNG KVLKDETTLV ENKVTEEGFL VVMLSKSKTA SSAGPSSTQP TSTTTSTISS
101: TTLAAPSTTQ SIAVPASNST PVQEQPTAQS DTYGQAASTL VSGSSIEQMV QQIMEMGGGS WDKETVTRAL RAAYNNPERA VDYLYSGIPE TVTIPATNLS
201: GVGSGRELTA PPPSGGPNSS PLDLFPQEAV SDAAGGDLGT LEFLRGNDQF QQLRSMVNSN PQILQPMLQE LGKQNPQLLR LIQENQAEFL QLLNEPYEGS
301: DGDVDIFDQP DQEMPHSVNV TPEEQESIER LEAMGFDRAI VIEAFLSCDR NEELAANYLL EHSADFED
101: TTLAAPSTTQ SIAVPASNST PVQEQPTAQS DTYGQAASTL VSGSSIEQMV QQIMEMGGGS WDKETVTRAL RAAYNNPERA VDYLYSGIPE TVTIPATNLS
201: GVGSGRELTA PPPSGGPNSS PLDLFPQEAV SDAAGGDLGT LEFLRGNDQF QQLRSMVNSN PQILQPMLQE LGKQNPQLLR LIQENQAEFL QLLNEPYEGS
301: DGDVDIFDQP DQEMPHSVNV TPEEQESIER LEAMGFDRAI VIEAFLSCDR NEELAANYLL EHSADFED
Arabidopsis Description
RAD23ARAD23A [Source:UniProtKB/TrEMBL;Acc:A0A178W4Q3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.