Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G029720.1 | Barley | cytosol, mitochondrion, nucleus | 11.14 | 81.48 |
| AT1G16190.1 | Thale cress | cytosol | 68.61 | 73.64 |
| KRH09619 | Soybean | cytosol, nucleus, plasma membrane | 38.23 | 72.6 |
| CDX79333 | Canola | cytosol | 68.86 | 70.1 |
| KRH47002 | Soybean | cytosol, nucleus, plastid | 63.54 | 69.15 |
| PGSC0003DMT400036871 | Potato | cytosol | 63.8 | 68.66 |
| Solyc03g117780.2.1 | Tomato | cytosol | 63.54 | 68.58 |
| KRH23694 | Soybean | cytosol | 63.54 | 68.39 |
| VIT_09s0018g01400.t01 | Wine grape | cytosol | 69.11 | 66.42 |
| KRH44654 | Soybean | cytosol, nucleus, plastid | 63.04 | 65.35 |
| Bra003599.1-P | Field mustard | cytosol, mitochondrion, plasma membrane, plastid | 70.13 | 64.42 |
| CDX67983 | Canola | plastid | 69.11 | 63.78 |
| TraesCS6B01G177400.1 | Wheat | cytosol | 57.97 | 62.4 |
| Os02t0179300-01 | Rice | plasma membrane | 58.23 | 62.33 |
| TraesCS6D01G138800.2 | Wheat | cytosol | 57.72 | 62.13 |
| TraesCS6A01G149500.1 | Wheat | cytosol | 57.72 | 62.13 |
| Zm00001d053738_P001 | Maize | cytosol | 56.71 | 60.87 |
| GSMUA_Achr4P20500_001 | Banana | cytosol | 59.75 | 60.67 |
| EES04633 | Sorghum | cytosol | 56.46 | 60.43 |
| GSMUA_Achr7P05130_001 | Banana | endoplasmic reticulum | 26.08 | 59.2 |
| GSMUA_Achr1P25580_001 | Banana | cytosol | 57.22 | 58.85 |
| HORVU6Hr1G029760.4 | Barley | cytosol | 50.63 | 58.48 |
| GSMUA_Achr7P05120_001 | Banana | cytosol | 36.2 | 52.38 |
| AT5G38470.1 | Thale cress | cytosol | 48.86 | 51.06 |
| AT3G02540.1 | Thale cress | cytosol | 46.58 | 43.91 |
| AT5G16090.1 | Thale cress | cytosol | 17.22 | 39.77 |
Protein Annotations
| Gene3D:1.10.10.540 | Gene3D:1.10.8.10 | MapMan:19.2.4.4.1 | Gene3D:3.10.20.90 | EntrezGene:844304 | ProteinID:AEE36282.1 |
| ArrayExpress:AT1G79650 | EnsemblPlantsGene:AT1G79650 | RefSeq:AT1G79650 | TAIR:AT1G79650 | RefSeq:AT1G79650-TAIR-G | EnsemblPlants:AT1G79650.4 |
| TAIR:AT1G79650.4 | Unigene:At.20519 | UniProt:F4IF85 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003684 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006289 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0043130 | GO:GO:0043161 |
| GO:GO:0070628 | InterPro:IPR000626 | InterPro:IPR015940 | InterPro:IPR036353 | RefSeq:NP_001185439.1 | PFAM:PF00240 |
| PFAM:PF00627 | PFAM:PF09280 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR01839 | PFscan:PS50030 | PFscan:PS50053 | PANTHER:PTHR10621 |
| PANTHER:PTHR10621:SF26 | Symbol:RAD23 | Symbol:RAD23B | InterPro:Rad23 | SMART:SM00165 | SMART:SM00213 |
| SMART:SM00727 | SUPFAM:SSF101238 | SUPFAM:SSF46934 | SUPFAM:SSF54236 | InterPro:STI1_HS-bd | TIGRFAMs:TIGR00601 |
| InterPro:UBA | InterPro:UBA-like_sf | UniParc:UPI0001E92C54 | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | InterPro:XPC-bd |
| InterPro:XPC-bd_sf | SEG:seg | : | : | : | : |
Description
RAD23Rad23 UV excision repair protein family [Source:UniProtKB/TrEMBL;Acc:F4IF85]
Coordinates
chr1:-:29972108..29975281
Molecular Weight (calculated)
42393.9 Da
IEP (calculated)
4.222
GRAVY (calculated)
-0.289
Length
395 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLTVKTLKG SHFEIRVLPS DTIMAVKKNI EDSQGKDNYP CGQQLLIHNG KVLKDETSLV ENKVTEEGFL VVMLSKSKSG GSAGQASVQT SSVSQPVSAT
101: TSSTKPAAPS TTQSSPVPAS PIPAQEQPAV YAFVFSFAGL AFCPLYGFPK VSMAQTDTYG QAASTLVSGS SLEQMVQQIM EMGGGSWDKE TVTRALRAAY
201: NNPERAVDYL YSGIPQTAEV AVPVPEAQIA GSGAAPVAPA SGGPNSSPLD LFPQETVAAA GSGDLGTLEF LRNNDQFQQL RTMVHSNPQI LQPMLQELGK
301: QNPQLLRLIQ ENQAEFLQLV NEPYEGSDGE GDMFDQPEQE MPHAINVTPA EQEAIQRLEA MGFDRALVIE AFLACDRNEE LAANYLLENS GDFED
101: TSSTKPAAPS TTQSSPVPAS PIPAQEQPAV YAFVFSFAGL AFCPLYGFPK VSMAQTDTYG QAASTLVSGS SLEQMVQQIM EMGGGSWDKE TVTRALRAAY
201: NNPERAVDYL YSGIPQTAEV AVPVPEAQIA GSGAAPVAPA SGGPNSSPLD LFPQETVAAA GSGDLGTLEF LRNNDQFQQL RTMVHSNPQI LQPMLQELGK
301: QNPQLLRLIQ ENQAEFLQLV NEPYEGSDGE GDMFDQPEQE MPHAINVTPA EQEAIQRLEA MGFDRALVIE AFLACDRNEE LAANYLLENS GDFED
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.