Factsheet for PGSC0003DMT400036871

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009215
PGSC0003DMT400058116

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16190.1	PGSC0003DMT400009215	AT4G38630.1	20059542
AT1G16190.1	PGSC0003DMT400058116	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g117780.2.1	Tomato	cytosol	90.19	90.44
HORVU6Hr1G029720.1	Barley	cytosol, mitochondrion, nucleus	12.26	83.33
KRH09619	Soybean	cytosol, nucleus, plasma membrane	40.33	71.15
CDX81753	Canola	cytosol, nucleus, plastid	67.85	68.59
KRH47002	Soybean	cytosol, nucleus, plastid	67.57	68.32
AT1G16190.1	Thale cress	cytosol	67.85	67.66
KRH23694	Soybean	cytosol	67.57	67.57
Bra026728.1-P	Field mustard	cytosol	65.67	67.13
CDY52848	Canola	cytosol	65.67	67.13
CDY33351	Canola	cytosol, nucleus, plastid	64.85	66.11
KRH44654	Soybean	cytosol, nucleus, plastid	68.39	65.88
VIT_09s0018g01400.t01	Wine grape	cytosol	71.66	63.99
AT1G79650.4	Thale cress	cytosol	68.66	63.8
CDX79333	Canola	cytosol	67.3	63.66
TraesCS6B01G177400.1	Wheat	cytosol	63.49	63.49
CDY35071	Canola	cytosol	63.76	63.41
Bra026076.1-P	Field mustard	cytosol	63.76	63.41
TraesCS6D01G138800.2	Wheat	cytosol	62.67	62.67
TraesCS6A01G149500.1	Wheat	cytosol	62.67	62.67
GSMUA_Achr4P20500_001	Banana	cytosol	66.21	62.47
Os02t0179300-01	Rice	plasma membrane	62.67	62.33
EES04633	Sorghum	cytosol	61.58	61.25
Zm00001d053738_P001	Maize	cytosol	61.31	61.14
GSMUA_Achr1P25580_001	Banana	cytosol	63.22	60.42
GSMUA_Achr7P05130_001	Banana	endoplasmic reticulum	28.61	60.34
HORVU6Hr1G029760.4	Barley	cytosol	55.31	59.36
CDX67983	Canola	plastid	67.03	57.48
Bra003599.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	64.58	55.12
GSMUA_Achr7P05120_001	Banana	cytosol	40.6	54.58
PGSC0003DMT400032941	Potato	cytosol	53.13	50.0
PGSC0003DMT400062159	Potato	cytosol	51.77	49.22

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	EntrezGene:102593740	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
GO:GO:0043161	InterPro:IPR000626	InterPro:IPR015940	InterPro:IPR036353	UniProt:M1B4E3	PFAM:PF00240
PFAM:PF00627	PFAM:PF09280	EnsemblPlantsGene:PGSC0003DMG401014218	PGSC:PGSC0003DMG401014218	EnsemblPlants:PGSC0003DMT400036871	PRINTS:PR01839
PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10621	PANTHER:PTHR10621:SF26	InterPro:Rad23	SMART:SM00165
SMART:SM00213	SMART:SM00727	SUPFAM:SSF101238	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd
TIGRFAMs:TIGR00601	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0002949FEB	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
InterPro:XPC-bd	InterPro:XPC-bd_sf	RefSeq:XP_006341431.1	SEG:seg	:	:

Description

Uv excision repair protein rad23 [Source:PGSC_GENE;Acc:PGSC0003DMG401014218]

Coordinates

chr3:-:57403815..57408531

Molecular Weight (calculated)

39271.9 Da

IEP (calculated)

4.161

GRAVY (calculated)

-0.363

Length

367 amino acids

Sequence
(BLAST)

001: MKLTVKTLKG SHFEIRVQPS DTIMAVKKNI EDVQGKDNYP CGQQLLIHNG KVLKDESTLL ENNVSEDGFL VVMLSKSKTA SSSGTTSAQQ PATAANPTTT
101: PEVIPPSQVP KDVVSASDAA AASLPADDYS QAASNLVAGN SLEQTIQQLM DMGGGSWDKE TVTRALRAAY NNPERAVDYL YSGIPETAEV AVPVARGGVN
201: SAAAAPTAAP TPPSSGAPNS APLNLFPQEN VAGAGSAGLG SLDFLRNNQQ FQALRSMVQA NPQILQPMLQ ELGKQNPQLL RSIQEHDQEF LQLINEPVDG
301: SDGDMFDQAE QEIPHTVSVT PEEQEVIERL EAMGFDRALV IEAFLACDRN EELAANYLLE HAGDYED

Best Arabidopsis Sequence Match ( AT1G79650.1 )
(BLAST)

001: MKLTVKTLKG SHFEIRVLPS DTIMAVKKNI EDSQGKDNYP CGQQLLIHNG KVLKDETSLV ENKVTEEGFL VVMLSKSKSG GSAGQASVQT SSVSQPVSAT
101: TSSTKPAAPS TTQSSPVPAS PIPAQEQPAA QTDTYGQAAS TLVSGSSLEQ MVQQIMEMGG GSWDKETVTR ALRAAYNNPE RAVDYLYSGI PQTAEVAVPV
201: PEAQIAGSGA APVAPASGGP NSSPLDLFPQ ETVAAAGSGD LGTLEFLRNN DQFQQLRTMV HSNPQILQPM LQELGKQNPQ LLRLIQENQA EFLQLVNEPY
301: EGSDGEGDMF DQPEQEMPHA INVTPAEQEA IQRLEAMGFD RALVIEAFLA CDRNEELAAN YLLENSGDFE D

Arabidopsis Description

RAD23Rad23 UV excision repair protein family [Source:UniProtKB/TrEMBL;Acc:F4IF85]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.