Factsheet for PGSC0003DMT400062159

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009215
PGSC0003DMT400058116

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38470.1	PGSC0003DMT400009215	AT4G38630.1	20059542
AT5G38470.1	PGSC0003DMT400058116	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g063130.2.1	Tomato	cytosol, extracellular	86.27	86.95
PGSC0003DMT400032941	Potato	cytosol	80.05	79.23
GSMUA_Achr9P15580_001	Banana	cytosol	42.49	74.21
Bra028184.1-P	Field mustard	cytosol	70.98	72.49
CDY01661	Canola	cytosol	70.98	72.49
CDX74522	Canola	cytosol	70.21	71.32
AT5G38470.1	Thale cress	cytosol	69.69	71.16
Bra028408.1-P	Field mustard	cytosol	70.21	70.94
CDY58121	Canola	cytosol	70.21	70.57
CDX67404	Canola	cytosol	69.43	70.16
GSMUA_Achr5P05860_001	Banana	cytosol	68.91	67.86
GSMUA_Achr3P07380_001	Banana	cytosol	67.62	63.81
Os02t0465000-00	Rice	cytosol	14.77	61.96
GSMUA_Achr9P15590_001	Banana	cytosol	22.54	61.27
Os06t0264300-01	Rice	cytosol, nucleus, plastid	65.28	61.02
KXG35597	Sorghum	cytosol	61.14	59.3
TraesCS7B01G113500.1	Wheat	cytosol	62.18	58.97
TraesCS7D01G209100.1	Wheat	cytosol	61.92	58.72
Zm00001d037326_P001	Maize	cytosol	61.14	58.71
TraesCS7A01G206300.1	Wheat	cytosol	61.92	58.58
KXG19738	Sorghum	cytosol	61.66	58.33
Os09t0407200-01	Rice	cytosol	58.81	57.91
Zm00001d045665_P003	Maize	cytosol	61.4	57.8
TraesCS5B01G204000.1	Wheat	cytosol	59.07	57.72
TraesCS5A01G204200.1	Wheat	cytosol	59.07	57.72
TraesCS5D01G211900.1	Wheat	cytosol	58.55	57.22
Os08t0430200-01	Rice	cytosol	59.07	56.16
HORVU5Hr1G060920.1	Barley	mitochondrion	60.36	53.81
PGSC0003DMT400036871	Potato	cytosol	49.22	51.77
HORVU7Hr1G042100.8	Barley	cytosol	55.7	51.19
Zm00001d005732_P001	Maize	cytosol	58.03	50.34
Zm00001d020419_P003	Maize	cytosol	50.0	42.23

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	ProteinID:ABB02636	ProteinID:ABB02636.1
ProteinID:ABB16981	ProteinID:ABB16981.1	ncoils:Coil	EMBL:DQ222505	EMBL:DQ228332	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
GO:GO:0043161	InterPro:IPR000626	InterPro:IPR015940	InterPro:IPR036353	UniProt:M1C8L6	PFAM:PF00240
PFAM:PF00627	PFAM:PF09280	EnsemblPlantsGene:PGSC0003DMG400024190	PGSC:PGSC0003DMG400024190	EnsemblPlants:PGSC0003DMT400062159	PRINTS:PR01839
PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10621	PANTHER:PTHR10621:SF8	InterPro:Rad23	SMART:SM00165
SMART:SM00213	SMART:SM00727	SUPFAM:SSF101238	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd
TIGRFAMs:TIGR00601	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI000295B3F6	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
InterPro:XPC-bd	InterPro:XPC-bd_sf	SEG:seg	:	:	:

Description

RAD23 [Source:PGSC_GENE;Acc:PGSC0003DMG400024190]

Coordinates

chr2:-:21853209..21859835

Molecular Weight (calculated)

40752.1 Da

IEP (calculated)

4.412

GRAVY (calculated)

-0.265

Length

386 amino acids

Sequence
(BLAST)

001: MKIFVKTLKG THFEIEVKPE DTVADVKKSI ETVQGQDVYP AAQQMLIHQG KVLKDPTTLE ENKVAENSFV VIMLSKNKVS TSGTSATQPA PSNSAQPATS
101: TGQPTQTVAP QATAASVAPA QSAAAPAPAP APAPAPAPAP AAANPLTDVY GQAASNLVAG STLETTVQQI LDMGGGSWER DTVVRALRAA YNNPERAIEY
201: LYSGIPEQAE IPPAAPASGQ AVNPPVQASQ PAVPSGGPNA NPLDLFPQGL PNVGSNVGAG NLDFLSNSPQ FQALRAMVQA NPQILQPMLQ ELGKQNPQLM
301: RLIQEHQADF LRLINEPVEG EGNVPGQPAG AIPQAVTVTP EEREAIERLE AMGFDRALVL QVFFACNKNE EMAANYLLDH MHEFDE

Best Arabidopsis Sequence Match ( AT3G02540.3 )
(BLAST)

001: MKIFVKTLKG THFEIEVKPE DSVVDVKKNI ESVQGADVYP AAKQMLIHQG KVLKDETTIE ENKVAENSFI VIMMNKSKPA SAAASSASAG TSQAKSIPPS
101: TSQPSISPQT PASVSAPVAP APTRPPPPAP TPTPAPVAAT ETVTTPIPEP VPATISSSTP APDSAPVGQG DVYGQAASNL AAGSNLESTI QQILDMGGGT
201: WDRETVVLAL RAAFNNPERA VEYLYTGIPE QAEVPPVARP PASAGQPANP PAQTQQPAAA PASGPNANPL DLFPQGLPNV GGNPGAGTLD FLRNSQQFQA
301: LRAMVQANPQ VLQPMLQELG KQNPNLMRLI QDHQADFLRL INEPVEGGGE SGNLLGQMAA GMPQPQAIQV THEEREAIER LEAMGFERAL VLEVFFACNK
401: NEELAANYLL DHMHEFEE

Arabidopsis Description

RAD23CUbiquitin receptor RAD23c [Source:UniProtKB/Swiss-Prot;Acc:Q84L31]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.