Factsheet for HORVU7Hr1G042100.8

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G063820.1
HORVU6Hr1G021020.1
HORVU7Hr1G097500.16

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02540.1	HORVU6Hr1G021020.1	AT2G20580.1	21798944
AT3G02540.1	HORVU7Hr1G097500.16	AT2G20580.1	21798944
AT3G02540.1	HORVU4Hr1G063820.1	AT4G38630.1	20059542
AT5G38470.1	HORVU4Hr1G063820.1	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G209100.1	Wheat	cytosol	80.24	82.8
TraesCS7B01G113500.1	Wheat	cytosol	79.52	82.06
TraesCS7A01G206300.1	Wheat	cytosol	73.1	75.25
Os06t0264300-01	Rice	cytosol, nucleus, plastid	66.67	67.8
KXG19738	Sorghum	cytosol	63.33	65.2
Zm00001d037326_P001	Maize	cytosol	62.38	65.17
Zm00001d045665_P003	Maize	cytosol	63.57	65.12
GSMUA_Achr9P15580_001	Banana	cytosol	30.0	57.01
PGSC0003DMT400032941	Potato	cytosol	52.62	56.67
GSMUA_Achr5P05860_001	Banana	cytosol	52.86	56.63
Solyc02g063130.2.1	Tomato	cytosol, extracellular	51.43	56.4
PGSC0003DMT400062159	Potato	cytosol	51.19	55.7
Solyc02g085840.2.1	Tomato	cytosol	51.43	55.53
KRH75377	Soybean	cytosol, nucleus	51.67	55.36
CDY01661	Canola	cytosol	49.05	54.5
CDX74522	Canola	cytosol	49.05	54.21
VIT_01s0011g03410.t01	Wine grape	cytosol	50.95	53.9
Bra028184.1-P	Field mustard	cytosol	48.33	53.7
GSMUA_Achr3P07380_001	Banana	cytosol	52.14	53.55
AT5G38470.1	Thale cress	cytosol	48.1	53.44
VIT_14s0006g03040.t01	Wine grape	cytosol	48.33	53.28
KRG90804	Soybean	cytosol	50.48	52.74
CDY58121	Canola	cytosol	48.1	52.6
CDX67404	Canola	cytosol	47.38	52.09
Bra028408.1-P	Field mustard	cytosol	47.38	52.09
KRH35965	Soybean	cytosol	50.48	51.96
Bra001050.1-P	Field mustard	cytosol	49.52	51.87
KRH45279	Soybean	cytosol	49.52	51.87
CDX74251	Canola	cytosol	48.81	51.12
Solyc04g007120.2.1	Tomato	cytosol, plastid	48.57	49.88
CDX91998	Canola	cytosol	47.86	49.88
AT3G02540.1	Thale cress	cytosol	47.86	47.97
HORVU5Hr1G060920.1	Barley	mitochondrion	49.29	47.81
KRH01763	Soybean	cytosol	40.48	45.33
HORVU6Hr1G029760.4	Barley	cytosol	32.62	40.06
AT5G16090.1	Thale cress	cytosol	14.29	35.09
CDY26494	Canola	nucleus	21.43	33.46
CDY26493	Canola	cytosol	27.86	32.96
CDX69474	Canola	cytosol	28.1	32.33
Bra008649.1-P	Field mustard	cytosol	26.19	31.98
CDY26496	Canola	cytosol	24.76	28.97
HORVU6Hr1G029720.1	Barley	cytosol, mitochondrion, nucleus	3.57	27.78
Bra008647.1-P	Field mustard	cytosol	22.14	26.2
CDX69472	Canola	cytosol	22.14	26.2
CDY26495	Canola	cytosol	11.19	24.74
Bra008648.1-P	Field mustard	cytosol	24.52	16.43
CDX69473	Canola	cytosol	24.52	15.63

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	EMBL:AK366293	UniProt:F2DQX5
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0006289	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0019538	GO:GO:0043161	EnsemblPlantsGene:HORVU7Hr1G042100	EnsemblPlants:HORVU7Hr1G042100.8	InterPro:IPR000626	InterPro:IPR015940
InterPro:IPR036353	PFAM:PF00240	PFAM:PF00627	PFAM:PF09280	PRINTS:PR01839	PFscan:PS50030
PFscan:PS50053	PANTHER:PTHR10621	PANTHER:PTHR10621:SF8	InterPro:Rad23	SMART:SM00165	SMART:SM00213
SMART:SM00727	SUPFAM:SSF101238	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd	TIGRFAMs:TIGR00601
InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI000200735C	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	InterPro:XPC-bd
InterPro:XPC-bd_sf	SEG:seg	:	:	:	:

Description

Predicted protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:F2DQX5]

Coordinates

chrchr7H:-:120007921..120013108

Molecular Weight (calculated)

43740.1 Da

IEP (calculated)

4.757

GRAVY (calculated)

-0.030

Length

420 amino acids

Sequence
(BLAST)

001: MKLNVKTLKG TSFEIEATPE SSVGEVKRII ESAQGQNVYP ADQLMIIYQG KILKDDTTLD ANKVAENSFL VIMLSKPKAS SSGASSASKA PVSQSQPATP
101: VAAATPPVPV ASAARSPPSQ APVAASEPAP PSAQPSAVSD TPAAAVTASG DADVYSQAAS NLVSGGILEQ TVQQILDMGG GTWERDMVVR ALRAAYNNPE
201: RAIDYLYSGI PESVEAPPVA RAPAPAQQAQ NLQAPSQAQA APLPAVQPSG GVSAGPNANP LNLFPQGVPS GGANAGAGVG AGAGALDALR QLPQFQALLA
301: LVQANPQILQ PMLQELGKQN PQILRLIQEN QAEFLRLVNE TPESGAGGNI LGALAAQMPQ AVQVTPEERE AIQRVQYILM ICFLCKTFPI SKFVYLYSVS
401: SVTLYSSNIH YQWTLSVSLL

Best Arabidopsis Sequence Match ( AT1G79650.1 )
(BLAST)

001: MKLTVKTLKG SHFEIRVLPS DTIMAVKKNI EDSQGKDNYP CGQQLLIHNG KVLKDETSLV ENKVTEEGFL VVMLSKSKSG GSAGQASVQT SSVSQPVSAT
101: TSSTKPAAPS TTQSSPVPAS PIPAQEQPAA QTDTYGQAAS TLVSGSSLEQ MVQQIMEMGG GSWDKETVTR ALRAAYNNPE RAVDYLYSGI PQTAEVAVPV
201: PEAQIAGSGA APVAPASGGP NSSPLDLFPQ ETVAAAGSGD LGTLEFLRNN DQFQQLRTMV HSNPQILQPM LQELGKQNPQ LLRLIQENQA EFLQLVNEPY
301: EGSDGEGDMF DQPEQEMPHA INVTPAEQEA IQRLEAMGFD RALVIEAFLA CDRNEELAAN YLLENSGDFE D

Arabidopsis Description

RAD23Rad23 UV excision repair protein family [Source:UniProtKB/TrEMBL;Acc:F4IF85]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.