CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35965	Soybean	cytosol	95.02	93.63
KRH45279	Soybean	cytosol	79.85	80.05
KRH75377	Soybean	cytosol, nucleus	76.37	78.32
GSMUA_Achr9P15580_001	Banana	cytosol	39.55	71.95
VIT_01s0011g03410.t01	Wine grape	cytosol	69.65	70.53
GSMUA_Achr5P05860_001	Banana	cytosol	65.92	67.6
Solyc04g007120.2.1	Tomato	cytosol, plastid	67.66	66.5
Os02t0465000-00	Rice	cytosol	14.93	65.22
GSMUA_Achr3P07380_001	Banana	cytosol	64.93	63.81
TraesCS5A01G204200.1	Wheat	cytosol	59.95	61.01
KRH09619	Soybean	cytosol, nucleus, plasma membrane	30.85	59.62
KXG19738	Sorghum	cytosol	60.2	59.31
KXG35597	Sorghum	cytosol	58.71	59.3
Zm00001d037326_P001	Maize	cytosol	58.96	58.96
Os06t0264300-01	Rice	cytosol, nucleus, plastid	60.2	58.6
KRH01763	Soybean	cytosol	54.23	58.13
Os08t0430200-01	Rice	cytosol	58.71	58.13
TraesCS7D01G209100.1	Wheat	cytosol	58.71	57.99
Os09t0407200-01	Rice	cytosol	56.47	57.91
TraesCS7B01G113500.1	Wheat	cytosol	58.46	57.74
TraesCS5D01G211900.1	Wheat	cytosol	55.97	56.96
TraesCS5B01G204000.1	Wheat	cytosol	55.72	56.71
TraesCS7A01G206300.1	Wheat	cytosol	57.21	56.37
GSMUA_Achr9P15590_001	Banana	cytosol	19.4	54.93
Zm00001d045665_P003	Maize	cytosol	55.97	54.88
HORVU5Hr1G060920.1	Barley	mitochondrion	58.71	54.5
KRH47002	Soybean	cytosol, nucleus, plastid	48.51	53.72
KRH23694	Soybean	cytosol	47.01	51.5
KRH44654	Soybean	cytosol, nucleus, plastid	48.26	50.92
Zm00001d005732_P001	Maize	cytosol	55.97	50.56
HORVU7Hr1G042100.8	Barley	cytosol	52.74	50.48
Zm00001d020419_P003	Maize	cytosol	47.01	41.36

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	EntrezGene:100814162	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	EMBL:ACUP02012641
EnsemblPlantsGene:GLYMA_20G114700	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006289	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0019538	GO:GO:0043161	UniProt:I1NFH7	InterPro:IPR000626	InterPro:IPR015940
InterPro:IPR036353	EnsemblPlants:KRG90804	ProteinID:KRG90804	ProteinID:KRG90804.1	PFAM:PF00240	PFAM:PF00627
PFAM:PF09280	PRINTS:PR01839	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10621	PANTHER:PTHR10621:SF7
InterPro:Rad23	SMART:SM00165	SMART:SM00213	SMART:SM00727	SUPFAM:SSF101238	SUPFAM:SSF46934
SUPFAM:SSF54236	InterPro:STI1_HS-bd	TIGRFAMs:TIGR00601	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI000233DBDD
InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	InterPro:XPC-bd	InterPro:XPC-bd_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr20:-:35630312..35634425

Molecular Weight (calculated)

42358.1 Da

IEP (calculated)

4.546

GRAVY (calculated)

-0.229

Length

402 amino acids

Sequence
(BLAST)

001: MKVFVKTLKG THFEIEVTPQ DTVSEVKKNI ETVQGADVYP AAQQMLIHQG KVLRDATTLE ENKVAENTFI VIMLSKSKST SGEGSTTSTA LSTKAPQTST
101: VPASTPPVSV APQAPAPAAT GALPASVTAP VSSPSPAPAP APAPISSGTA VEGSDIYGQA ASNLVAGSNL EGTIQQILDM GGGSWDRDTV VRALRAAYNN
201: PERAVEYLYT GIPEQAEAPL VARAPVSAQP TNPPADAPQT AQPAAVTSAG PNANPLDLFP QGLPNVGSGA AGAGSLDFLR NSQQFQALRA MVQANPQILQ
301: PMLQELGKQN PHLMRLIRDH QADFLRLINE PAEGGEGNIL GQMASGMPQA VTVTPEERQA IERLEAMGFD RAIVLEVYFA CNKNEELAAN YLLDHMHEFE
401: EQ

Best Arabidopsis Sequence Match ( AT3G02540.3 )
(BLAST)

001: MKIFVKTLKG THFEIEVKPE DSVVDVKKNI ESVQGADVYP AAKQMLIHQG KVLKDETTIE ENKVAENSFI VIMMNKSKPA SAAASSASAG TSQAKSIPPS
101: TSQPSISPQT PASVSAPVAP APTRPPPPAP TPTPAPVAAT ETVTTPIPEP VPATISSSTP APDSAPVGQG DVYGQAASNL AAGSNLESTI QQILDMGGGT
201: WDRETVVLAL RAAFNNPERA VEYLYTGIPE QAEVPPVARP PASAGQPANP PAQTQQPAAA PASGPNANPL DLFPQGLPNV GGNPGAGTLD FLRNSQQFQA
301: LRAMVQANPQ VLQPMLQELG KQNPNLMRLI QDHQADFLRL INEPVEGGGE SGNLLGQMAA GMPQPQAIQV THEEREAIER LEAMGFERAL VLEVFFACNK
401: NEELAANYLL DHMHEFEE

Arabidopsis Description

RAD23CUbiquitin receptor RAD23c [Source:UniProtKB/Swiss-Prot;Acc:Q84L31]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.