Factsheet for Solyc04g007120.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0011g03410.t01	Wine grape	cytosol	70.66	72.8
KRH75377	Soybean	cytosol, nucleus	68.22	71.17
Solyc02g063130.2.1	Tomato	cytosol, extracellular	66.26	70.76
GSMUA_Achr9P15580_001	Banana	cytosol	37.65	69.68
Solyc02g085840.2.1	Tomato	cytosol	66.01	69.41
KRH45279	Soybean	cytosol	67.97	69.33
KRG90804	Soybean	cytosol	66.5	67.66
KRH35965	Soybean	cytosol	67.48	67.65
GSMUA_Achr5P05860_001	Banana	cytosol	61.37	64.03
GSMUA_Achr3P07380_001	Banana	cytosol	62.35	62.35
Zm00001d037326_P001	Maize	cytosol	57.95	58.96
Os06t0264300-01	Rice	cytosol, nucleus, plastid	59.17	58.6
KXG35597	Sorghum	cytosol	56.72	58.29
KXG19738	Sorghum	cytosol	57.95	58.09
TraesCS7D01G209100.1	Wheat	cytosol	57.7	57.99
GSMUA_Achr9P15590_001	Banana	cytosol	20.05	57.75
TraesCS5B01G204000.1	Wheat	cytosol	55.75	57.72
Os02t0465000-00	Rice	cytosol	12.96	57.61
Os08t0430200-01	Rice	cytosol	56.97	57.39
Zm00001d045665_P003	Maize	cytosol	57.46	57.32
TraesCS7B01G113500.1	Wheat	cytosol	56.97	57.25
TraesCS5D01G211900.1	Wheat	cytosol	55.26	57.22
TraesCS5A01G204200.1	Wheat	cytosol	55.01	56.96
Os09t0407200-01	Rice	cytosol	54.03	56.38
TraesCS7A01G206300.1	Wheat	cytosol	55.99	56.13
Solyc03g117780.2.1	Tomato	cytosol	48.66	54.37
HORVU5Hr1G060920.1	Barley	mitochondrion	55.5	52.42
HORVU7Hr1G042100.8	Barley	cytosol	49.88	48.57
Zm00001d005732_P001	Maize	cytosol	52.81	48.54
Zm00001d020419_P003	Maize	cytosol	45.72	40.92

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003684	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0043161
InterPro:IPR000626	InterPro:IPR015940	InterPro:IPR036353	UniProt:K4BNL9	PFAM:PF00240	PFAM:PF00627
PFAM:PF09280	PRINTS:PR01839	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10621	PANTHER:PTHR10621:SF8
InterPro:Rad23	SMART:SM00165	SMART:SM00213	SMART:SM00727	SUPFAM:SSF101238	SUPFAM:SSF46934
SUPFAM:SSF54236	InterPro:STI1_HS-bd	EnsemblPlantsGene:Solyc04g007120.2	EnsemblPlants:Solyc04g007120.2.1	TIGRFAMs:TIGR00601	InterPro:UBA
InterPro:UBA-like_sf	UniParc:UPI00027667C9	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	InterPro:XPC-bd	InterPro:XPC-bd_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:-:832713..843272

Molecular Weight (calculated)

42619.3 Da

IEP (calculated)

4.455

GRAVY (calculated)

-0.175

Length

409 amino acids

Sequence
(BLAST)

001: MKIFVKTLKG SHFEIEVKPE DTVADVKKNI ETVQGSDVYP AAQQMLIHQG KVLKDGTTLE ENKVAESNFI VIMLTKSKSS AGEGSATSTA ATAKTPQSST
101: AAPSSTPAST AAQVPVASPA AAPSPAPAPA AAPAPALAPA PASVPVPAPA LAPASAVVSG SDVYGQAASS LVAGNNLDGA IQQILDMGGG TWDRETVVRA
201: LRAAFNNPER AVEYLYSGIP EAAEVPPVGG SPPSVQAGNQ PAQPQPAAQP APVPAGGPNA DPLNLFPQGL PSVGSNTAGA NTLDFLRNSQ QFQALRAMVQ
301: ANPQILQPML QELGKQNPHL MRLIQEHQAD FLRLINEPVE GGEGNNVLGQ LAAAMPQAIS VTPEEREAIE RLEQMGFDHD LVLEVFFACN KNEELAANYL
401: LDHIHEFEE

Best Arabidopsis Sequence Match ( AT3G02540.1 )
(BLAST)

001: MKIFVKTLKG THFEIEVKPE DSVVDVKKNI ESVQGADVYP AAKQMLIHQG KVLKDETTIE ENKVAENSFI VIMMNKSKPA SAAASSASAG TSQAKSIPPS
101: TSQPSISPQT PASVSAPVAP APTRPPPPAP TPTPAPVAAT ETVTTPIPEP VPATISSSTP APDSAPVGSQ GDVYGQAASN LAAGSNLEST IQQILDMGGG
201: TWDRETVVLA LRAAFNNPER AVEYLYTGIP EQAEVPPVAR PPASAGQPAN PPAQTQQPAA APASGPNANP LDLFPQGLPN VGGNPGAGTL DFLRNSQQFQ
301: ALRAMVQANP QVLQPMLQEL GKQNPNLMRL IQDHQADFLR LINEPVEGGG ESGNLLGQMA AGMPQPQAIQ VTHEEREAIE RLEAMGFERA LVLEVFFACN
401: KNEELAANYL LDHMHEFEE

Arabidopsis Description

RAD23CUbiquitin receptor RAD23c [Source:UniProtKB/Swiss-Prot;Acc:Q84L31]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.