Factsheet for Solyc02g063130.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g083710.2.1
Solyc03g033430.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38470.1	Solyc02g083710.2.1	AT4G38630.1	20059542
AT5G38470.1	Solyc03g033430.1.1	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400062159	Potato	cytosol	86.95	86.27
Solyc02g085840.2.1	Tomato	cytosol	77.02	75.84
Bra028184.1-P	Field mustard	cytosol	70.23	71.16
GSMUA_Achr9P15580_001	Banana	cytosol	40.99	71.04
CDY01661	Canola	cytosol	69.97	70.9
CDX74522	Canola	cytosol	69.97	70.53
AT5G38470.1	Thale cress	cytosol	69.45	70.37
CDY58121	Canola	cytosol	70.5	70.31
CDX67404	Canola	cytosol	69.97	70.16
Bra028408.1-P	Field mustard	cytosol	69.71	69.9
GSMUA_Achr5P05860_001	Banana	cytosol	69.19	67.6
Solyc04g007120.2.1	Tomato	cytosol, plastid	70.76	66.26
GSMUA_Achr3P07380_001	Banana	cytosol	67.36	63.08
Os06t0264300-01	Rice	cytosol, nucleus, plastid	66.06	61.26
Zm00001d037326_P001	Maize	cytosol	64.23	61.19
Os02t0465000-00	Rice	cytosol	14.62	60.87
KXG19738	Sorghum	cytosol	64.75	60.78
GSMUA_Achr9P15590_001	Banana	cytosol	22.19	59.86
KXG35597	Sorghum	cytosol	61.62	59.3
TraesCS7D01G209100.1	Wheat	cytosol	62.66	58.97
TraesCS7B01G113500.1	Wheat	cytosol	62.4	58.72
TraesCS5A01G204200.1	Wheat	cytosol	60.31	58.48
Os09t0407200-01	Rice	cytosol	59.79	58.42
TraesCS7A01G206300.1	Wheat	cytosol	62.14	58.33
Os08t0430200-01	Rice	cytosol	61.62	58.13
TraesCS5B01G204000.1	Wheat	cytosol	59.53	57.72
TraesCS5D01G211900.1	Wheat	cytosol	59.53	57.72
Zm00001d045665_P003	Maize	cytosol	60.84	56.83
HORVU5Hr1G060920.1	Barley	mitochondrion	60.57	53.58
HORVU7Hr1G042100.8	Barley	cytosol	56.4	51.43
Zm00001d005732_P001	Maize	cytosol	59.53	51.24
Solyc03g117780.2.1	Tomato	cytosol	48.56	50.82
Zm00001d020419_P003	Maize	cytosol	51.17	42.89

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
GO:GO:0043161	InterPro:IPR000626	InterPro:IPR015940	InterPro:IPR036353	UniProt:K4B6K0	PFAM:PF00240
PFAM:PF00627	PFAM:PF09280	PRINTS:PR01839	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10621
PANTHER:PTHR10621:SF8	InterPro:Rad23	SMART:SM00165	SMART:SM00213	SMART:SM00727	SUPFAM:SSF101238
SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd	EnsemblPlantsGene:Solyc02g063130.2	EnsemblPlants:Solyc02g063130.2.1	TIGRFAMs:TIGR00601
InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0002768651	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	InterPro:XPC-bd
InterPro:XPC-bd_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:-:35172861..35179263

Molecular Weight (calculated)

40514.8 Da

IEP (calculated)

4.412

GRAVY (calculated)

-0.283

Length

383 amino acids

Sequence
(BLAST)

001: MKIFVKTLKG THFEIEVKPE DTVADVKKSI ETVQGQDVYP AAQQMLIHQG KVLKDPTTLE ENKVAENSFV VIMLSKNKVS TSGTSATQPA PSNSAQPATS
101: TGQPTQTVAP QATAASVAPA QSAPAPAPAP APAAAPAPAP AAANPLTDVY GQAASNLVAG STLETTVQQI LDMGGGSWER DTVVRALRAA YNNPERAIEY
201: LYSGIPEQAE IPPVAPASGQ AVNPPVQASQ PSSGPNANPL DLFPQGLPNV GANAGAGNLD FLSNSPQFQA LRAMVQANPQ ILQPMLQELG KQNPQLMRLI
301: QEHQADFLRL INEPVEGEGN VPGQPAGAIP QAVTVTPEER EAIERLEAMG FDRALVLQVY FACNKNEEMA ANYLLDHMHE FDE

Best Arabidopsis Sequence Match ( AT3G02540.3 )
(BLAST)

001: MKIFVKTLKG THFEIEVKPE DSVVDVKKNI ESVQGADVYP AAKQMLIHQG KVLKDETTIE ENKVAENSFI VIMMNKSKPA SAAASSASAG TSQAKSIPPS
101: TSQPSISPQT PASVSAPVAP APTRPPPPAP TPTPAPVAAT ETVTTPIPEP VPATISSSTP APDSAPVGQG DVYGQAASNL AAGSNLESTI QQILDMGGGT
201: WDRETVVLAL RAAFNNPERA VEYLYTGIPE QAEVPPVARP PASAGQPANP PAQTQQPAAA PASGPNANPL DLFPQGLPNV GGNPGAGTLD FLRNSQQFQA
301: LRAMVQANPQ VLQPMLQELG KQNPNLMRLI QDHQADFLRL INEPVEGGGE SGNLLGQMAA GMPQPQAIQV THEEREAIER LEAMGFERAL VLEVFFACNK
401: NEELAANYLL DHMHEFEE

Arabidopsis Description

RAD23CUbiquitin receptor RAD23c [Source:UniProtKB/Swiss-Prot;Acc:Q84L31]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.