Factsheet for Zm00001d037326_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d015259_P001
Zm00001d024336_P001
Zm00001d028396_P001
Zm00001d040834_P001
Zm00001d047941_P001
Zm00001d053881_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02540.1	Zm00001d015259_P001	AT2G20580.1	21798944
AT3G02540.1	Zm00001d053881_P001	AT2G20580.1	21798944
AT3G02540.1	Zm00001d024336_P001	AT4G38630.1	20059542
AT3G02540.1	Zm00001d028396_P001	AT4G38630.1	20059542
AT3G02540.1	Zm00001d040834_P001	AT4G38630.1	20059542
AT3G02540.1	Zm00001d047941_P001	AT4G38630.1	20059542
AT5G38470.1	Zm00001d024336_P001	AT4G38630.1	20059542
AT5G38470.1	Zm00001d028396_P001	AT4G38630.1	20059542
AT5G38470.1	Zm00001d040834_P001	AT4G38630.1	20059542
AT5G38470.1	Zm00001d047941_P001	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG19738	Sorghum	cytosol	93.03	91.67
Zm00001d045665_P003	Maize	cytosol	79.85	78.29
TraesCS7D01G209100.1	Wheat	cytosol	73.38	72.48
TraesCS7B01G113500.1	Wheat	cytosol	73.13	72.24
Os06t0264300-01	Rice	cytosol, nucleus, plastid	73.88	71.91
TraesCS7A01G206300.1	Wheat	cytosol	69.9	68.87
GSMUA_Achr9P15580_001	Banana	cytosol	35.82	65.16
Solyc02g063130.2.1	Tomato	cytosol, extracellular	61.19	64.23
HORVU7Hr1G042100.8	Barley	cytosol	65.17	62.38
Solyc02g085840.2.1	Tomato	cytosol	59.95	61.95
PGSC0003DMT400032941	Potato	cytosol	59.45	61.28
PGSC0003DMT400062159	Potato	cytosol	58.71	61.14
CDX67404	Canola	cytosol	57.96	60.99
KRH75377	Soybean	cytosol, nucleus	59.2	60.71
CDY58121	Canola	cytosol	57.96	60.68
Bra028184.1-P	Field mustard	cytosol	56.97	60.58
Bra028408.1-P	Field mustard	cytosol	57.46	60.47
CDY01661	Canola	cytosol	56.72	60.32
AT5G38470.1	Thale cress	cytosol	56.47	60.05
VIT_01s0011g03410.t01	Wine grape	cytosol	59.2	59.95
CDX74522	Canola	cytosol	56.47	59.74
GSMUA_Achr5P05860_001	Banana	cytosol	58.21	59.69
VIT_14s0006g03040.t01	Wine grape	cytosol	55.97	59.06
KRG90804	Soybean	cytosol	58.96	58.96
KRH45279	Soybean	cytosol	58.71	58.85
GSMUA_Achr3P07380_001	Banana	cytosol	59.2	58.19
Solyc04g007120.2.1	Tomato	cytosol, plastid	58.96	57.95
KRH35965	Soybean	cytosol	56.97	56.13
CDX74251	Canola	cytosol	55.97	56.11
Bra001050.1-P	Field mustard	cytosol	55.47	55.61
CDX91998	Canola	cytosol	53.98	53.85
AT3G02540.1	Thale cress	cytosol	55.97	53.7
AT5G16090.1	Thale cress	cytosol	21.39	50.29
KRH01763	Soybean	cytosol	46.27	49.6
Zm00001d005732_P001	Maize	cytosol	53.48	48.31
Zm00001d053738_P001	Maize	cytosol	42.79	46.74
Zm00001d020419_P003	Maize	cytosol	45.27	39.82
CDY26493	Canola	cytosol	31.84	36.06
CDX69474	Canola	cytosol	32.59	35.89
Bra008649.1-P	Field mustard	cytosol	30.35	35.47
CDY26494	Canola	nucleus	23.13	34.57
CDY26496	Canola	cytosol	29.1	32.59
CDX69472	Canola	cytosol	27.11	30.7
Bra008647.1-P	Field mustard	cytosol	27.11	30.7
CDY26495	Canola	cytosol	12.69	26.84
Bra008648.1-P	Field mustard	cytosol	29.35	18.82
CDX69473	Canola	cytosol	28.86	17.6

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	EntrezGene:100282762	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	ProteinID:AQK83618.1
ProteinID:AQK83619.1	UniProt:B6TB61	EMBL:EU962226	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003684	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0043161	InterPro:IPR000626
InterPro:IPR015940	InterPro:IPR036353	PFAM:PF00240	PFAM:PF00627	PFAM:PF09280	PRINTS:PR01839
PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10621	PANTHER:PTHR10621:SF8	InterPro:Rad23	SMART:SM00165
SMART:SM00213	SMART:SM00727	SUPFAM:SSF101238	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd
TIGRFAMs:TIGR00601	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI000182CDA6	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
InterPro:XPC-bd	InterPro:XPC-bd_sf	EnsemblPlantsGene:Zm00001d037326	EnsemblPlants:Zm00001d037326_P001	EnsemblPlants:Zm00001d037326_T001	SEG:seg

Description

Ubiquitin receptor RAD23c

Coordinates

chr6:-:121213396..121219719

Molecular Weight (calculated)

42135.4 Da

IEP (calculated)

4.367

GRAVY (calculated)

-0.293

Length

402 amino acids

Sequence
(BLAST)

001: MKLNVKTLKG TNFEIEASPD ASVAEVKRII ETTQGQSTYP ADQQMLIYQG KILKDETTLE SNGVAENSFL VIMLSKAKAS SSGASTATAA KAPATPAQPA
101: APATSVVRTP TQAPVATAET APPSAQTQAA PAATAAASDD ADVYSQAASN LVSGNNLEQT IQQILDMGGG TWERGTVVRA LRAAYNNPER AIDYLYSGIP
201: ENVEAPPVAR APAAGQQTNQ QAPSPAQPAA APPVQSSAAS ARPNANPLNL FPQGVPSGGA NPGVVPAAGS GALDALRQLP QFQALLQLVQ ANPQILQPML
301: QELGKQNPQI LRLIQENQAE FVRLVNETPE GGPGGNILGQ LAAAMPQSVT VTPEEREAIQ RLEGMGFNHE LVLEVFFACN KDEELAANYL LDHGHEFDEQ
401: QQ

Best Arabidopsis Sequence Match ( AT1G79650.1 )
(BLAST)

001: MKLTVKTLKG SHFEIRVLPS DTIMAVKKNI EDSQGKDNYP CGQQLLIHNG KVLKDETSLV ENKVTEEGFL VVMLSKSKSG GSAGQASVQT SSVSQPVSAT
101: TSSTKPAAPS TTQSSPVPAS PIPAQEQPAA QTDTYGQAAS TLVSGSSLEQ MVQQIMEMGG GSWDKETVTR ALRAAYNNPE RAVDYLYSGI PQTAEVAVPV
201: PEAQIAGSGA APVAPASGGP NSSPLDLFPQ ETVAAAGSGD LGTLEFLRNN DQFQQLRTMV HSNPQILQPM LQELGKQNPQ LLRLIQENQA EFLQLVNEPY
301: EGSDGEGDMF DQPEQEMPHA INVTPAEQEA IQRLEAMGFD RALVIEAFLA CDRNEELAAN YLLENSGDFE D

Arabidopsis Description

RAD23Rad23 UV excision repair protein family [Source:UniProtKB/TrEMBL;Acc:F4IF85]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.