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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra001050.1-P Field mustard cytosol 77.8 81.3
CDX74251 Canola cytosol 76.37 79.8
CDX91998 Canola cytosol 75.42 78.41
VIT_14s0006g03040.t01 Wine grape cytosol 65.16 71.65
GSMUA_Achr9P15580_001 Banana cytosol 37.23 70.59
AT5G38470.1 Thale cress cytosol 62.53 69.31
GSMUA_Achr5P05860_001 Banana cytosol 61.81 66.07
GSMUA_Achr3P07380_001 Banana cytosol 60.62 62.1
Os02t0465000-00 Rice cytosol 13.37 60.87
KXG19738 Sorghum cytosol 56.32 57.84
TraesCS5A01G204200.1 Wheat cytosol 54.42 57.72
TraesCS5B01G204000.1 Wheat cytosol 54.18 57.47
Os06t0264300-01 Rice cytosol, nucleus, plastid 56.56 57.38
KXG35597 Sorghum cytosol 54.18 57.04
TraesCS5D01G211900.1 Wheat cytosol 53.7 56.96
Os09t0407200-01 Rice cytosol 53.22 56.89
TraesCS7D01G209100.1 Wheat cytosol 55.13 56.76
TraesCS7B01G113500.1 Wheat cytosol 54.89 56.51
Os08t0430200-01 Rice cytosol 54.65 56.4
Zm00001d037326_P001 Maize cytosol 53.7 55.97
AT5G16090.1 Thale cress cytosol 22.67 55.56
Zm00001d045665_P003 Maize cytosol 54.18 55.37
TraesCS7A01G206300.1 Wheat cytosol 53.7 55.15
GSMUA_Achr9P15590_001 Banana cytosol 18.38 54.23
HORVU5Hr1G060920.1 Barley mitochondrion 54.42 52.66
Zm00001d005732_P001 Maize cytosol 52.51 49.44
AT1G16190.1 Thale cress cytosol 42.72 48.64
HORVU7Hr1G042100.8 Barley cytosol 47.97 47.86
AT1G79650.4 Thale cress cytosol 43.91 46.58
Zm00001d020419_P003 Maize cytosol 44.87 41.14
Protein Annotations
Gene3D:1.10.10.540Gene3D:1.10.8.10MapMan:19.2.4.4.1Gene3D:3.10.20.90EntrezGene:821195ProteinID:AAF32461.1
EMBL:AB109196EMBL:AB109197ProteinID:AEE73824.1ArrayExpress:AT3G02540EnsemblPlantsGene:AT3G02540RefSeq:AT3G02540
TAIR:AT3G02540RefSeq:AT3G02540-TAIR-GEnsemblPlants:AT3G02540.1TAIR:AT3G02540.1EMBL:AY039562EMBL:AY113034
Unigene:At.21477GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003684GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005737
GO:GO:0006139GO:GO:0006259GO:GO:0006281GO:GO:0006289GO:GO:0006950GO:GO:0006974
GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009987GO:GO:0019538GO:GO:0031593
GO:GO:0043130GO:GO:0043161GO:GO:0070628InterPro:IPR000626InterPro:IPR015940InterPro:IPR036353
RefSeq:NP_186903.1PFAM:PF00240PFAM:PF00627PFAM:PF09280PO:PO:0000013PO:PO:0000037
PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185
PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115
PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006
PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031
PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038
PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025281PRINTS:PR01839PFscan:PS50030
PFscan:PS50053PANTHER:PTHR10621PANTHER:PTHR10621:SF8UniProt:Q84L31Symbol:RAD23-3Symbol:RAD23C
InterPro:Rad23SMART:SM00165SMART:SM00213SMART:SM00727SUPFAM:SSF101238SUPFAM:SSF46934
SUPFAM:SSF54236InterPro:STI1_HS-bdTIGRFAMs:TIGR00601InterPro:UBAInterPro:UBA-like_sfUniParc:UPI00000A92B5
InterPro:Ubiquitin-like_domsfInterPro:Ubiquitin_domInterPro:XPC-bdInterPro:XPC-bd_sfSEG:seg:
Description
RAD23CUbiquitin receptor RAD23c [Source:UniProtKB/Swiss-Prot;Acc:Q84L31]
Coordinates
chr3:-:532808..536414
Molecular Weight (calculated)
44249.3 Da
IEP (calculated)
4.489
GRAVY (calculated)
-0.310
Length
419 amino acids
Sequence
(BLAST)
001: MKIFVKTLKG THFEIEVKPE DSVVDVKKNI ESVQGADVYP AAKQMLIHQG KVLKDETTIE ENKVAENSFI VIMMNKSKPA SAAASSASAG TSQAKSIPPS
101: TSQPSISPQT PASVSAPVAP APTRPPPPAP TPTPAPVAAT ETVTTPIPEP VPATISSSTP APDSAPVGSQ GDVYGQAASN LAAGSNLEST IQQILDMGGG
201: TWDRETVVLA LRAAFNNPER AVEYLYTGIP EQAEVPPVAR PPASAGQPAN PPAQTQQPAA APASGPNANP LDLFPQGLPN VGGNPGAGTL DFLRNSQQFQ
301: ALRAMVQANP QVLQPMLQEL GKQNPNLMRL IQDHQADFLR LINEPVEGGG ESGNLLGQMA AGMPQPQAIQ VTHEEREAIE RLEAMGFERA LVLEVFFACN
401: KNEELAANYL LDHMHEFEE
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.