Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra001050.1-P | Field mustard | cytosol | 77.8 | 81.3 |
CDX74251 | Canola | cytosol | 76.37 | 79.8 |
CDX91998 | Canola | cytosol | 75.42 | 78.41 |
VIT_14s0006g03040.t01 | Wine grape | cytosol | 65.16 | 71.65 |
GSMUA_Achr9P15580_001 | Banana | cytosol | 37.23 | 70.59 |
AT5G38470.1 | Thale cress | cytosol | 62.53 | 69.31 |
GSMUA_Achr5P05860_001 | Banana | cytosol | 61.81 | 66.07 |
GSMUA_Achr3P07380_001 | Banana | cytosol | 60.62 | 62.1 |
Os02t0465000-00 | Rice | cytosol | 13.37 | 60.87 |
KXG19738 | Sorghum | cytosol | 56.32 | 57.84 |
TraesCS5A01G204200.1 | Wheat | cytosol | 54.42 | 57.72 |
TraesCS5B01G204000.1 | Wheat | cytosol | 54.18 | 57.47 |
Os06t0264300-01 | Rice | cytosol, nucleus, plastid | 56.56 | 57.38 |
KXG35597 | Sorghum | cytosol | 54.18 | 57.04 |
TraesCS5D01G211900.1 | Wheat | cytosol | 53.7 | 56.96 |
Os09t0407200-01 | Rice | cytosol | 53.22 | 56.89 |
TraesCS7D01G209100.1 | Wheat | cytosol | 55.13 | 56.76 |
TraesCS7B01G113500.1 | Wheat | cytosol | 54.89 | 56.51 |
Os08t0430200-01 | Rice | cytosol | 54.65 | 56.4 |
Zm00001d037326_P001 | Maize | cytosol | 53.7 | 55.97 |
AT5G16090.1 | Thale cress | cytosol | 22.67 | 55.56 |
Zm00001d045665_P003 | Maize | cytosol | 54.18 | 55.37 |
TraesCS7A01G206300.1 | Wheat | cytosol | 53.7 | 55.15 |
GSMUA_Achr9P15590_001 | Banana | cytosol | 18.38 | 54.23 |
HORVU5Hr1G060920.1 | Barley | mitochondrion | 54.42 | 52.66 |
Zm00001d005732_P001 | Maize | cytosol | 52.51 | 49.44 |
AT1G16190.1 | Thale cress | cytosol | 42.72 | 48.64 |
HORVU7Hr1G042100.8 | Barley | cytosol | 47.97 | 47.86 |
AT1G79650.4 | Thale cress | cytosol | 43.91 | 46.58 |
Zm00001d020419_P003 | Maize | cytosol | 44.87 | 41.14 |
Protein Annotations
Gene3D:1.10.10.540 | Gene3D:1.10.8.10 | MapMan:19.2.4.4.1 | Gene3D:3.10.20.90 | EntrezGene:821195 | ProteinID:AAF32461.1 |
EMBL:AB109196 | EMBL:AB109197 | ProteinID:AEE73824.1 | ArrayExpress:AT3G02540 | EnsemblPlantsGene:AT3G02540 | RefSeq:AT3G02540 |
TAIR:AT3G02540 | RefSeq:AT3G02540-TAIR-G | EnsemblPlants:AT3G02540.1 | TAIR:AT3G02540.1 | EMBL:AY039562 | EMBL:AY113034 |
Unigene:At.21477 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003684 | GO:GO:0005488 |
GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006289 | GO:GO:0006950 | GO:GO:0006974 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0031593 |
GO:GO:0043130 | GO:GO:0043161 | GO:GO:0070628 | InterPro:IPR000626 | InterPro:IPR015940 | InterPro:IPR036353 |
RefSeq:NP_186903.1 | PFAM:PF00240 | PFAM:PF00627 | PFAM:PF09280 | PO:PO:0000013 | PO:PO:0000037 |
PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR01839 | PFscan:PS50030 |
PFscan:PS50053 | PANTHER:PTHR10621 | PANTHER:PTHR10621:SF8 | UniProt:Q84L31 | Symbol:RAD23-3 | Symbol:RAD23C |
InterPro:Rad23 | SMART:SM00165 | SMART:SM00213 | SMART:SM00727 | SUPFAM:SSF101238 | SUPFAM:SSF46934 |
SUPFAM:SSF54236 | InterPro:STI1_HS-bd | TIGRFAMs:TIGR00601 | InterPro:UBA | InterPro:UBA-like_sf | UniParc:UPI00000A92B5 |
InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | InterPro:XPC-bd | InterPro:XPC-bd_sf | SEG:seg | : |
Description
RAD23CUbiquitin receptor RAD23c [Source:UniProtKB/Swiss-Prot;Acc:Q84L31]
Coordinates
chr3:-:532808..536414
Molecular Weight (calculated)
44249.3 Da
IEP (calculated)
4.489
GRAVY (calculated)
-0.310
Length
419 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIFVKTLKG THFEIEVKPE DSVVDVKKNI ESVQGADVYP AAKQMLIHQG KVLKDETTIE ENKVAENSFI VIMMNKSKPA SAAASSASAG TSQAKSIPPS
101: TSQPSISPQT PASVSAPVAP APTRPPPPAP TPTPAPVAAT ETVTTPIPEP VPATISSSTP APDSAPVGSQ GDVYGQAASN LAAGSNLEST IQQILDMGGG
201: TWDRETVVLA LRAAFNNPER AVEYLYTGIP EQAEVPPVAR PPASAGQPAN PPAQTQQPAA APASGPNANP LDLFPQGLPN VGGNPGAGTL DFLRNSQQFQ
301: ALRAMVQANP QVLQPMLQEL GKQNPNLMRL IQDHQADFLR LINEPVEGGG ESGNLLGQMA AGMPQPQAIQ VTHEEREAIE RLEAMGFERA LVLEVFFACN
401: KNEELAANYL LDHMHEFEE
101: TSQPSISPQT PASVSAPVAP APTRPPPPAP TPTPAPVAAT ETVTTPIPEP VPATISSSTP APDSAPVGSQ GDVYGQAASN LAAGSNLEST IQQILDMGGG
201: TWDRETVVLA LRAAFNNPER AVEYLYTGIP EQAEVPPVAR PPASAGQPAN PPAQTQQPAA APASGPNANP LDLFPQGLPN VGGNPGAGTL DFLRNSQQFQ
301: ALRAMVQANP QVLQPMLQEL GKQNPNLMRL IQDHQADFLR LINEPVEGGG ESGNLLGQMA AGMPQPQAIQ VTHEEREAIE RLEAMGFERA LVLEVFFACN
401: KNEELAANYL LDHMHEFEE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.