Factsheet for Zm00001d005732_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d015259_P001
Zm00001d024336_P001
Zm00001d028396_P001
Zm00001d040834_P001
Zm00001d047941_P001
Zm00001d053881_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02540.1	Zm00001d015259_P001	AT2G20580.1	21798944
AT3G02540.1	Zm00001d053881_P001	AT2G20580.1	21798944
AT3G02540.1	Zm00001d024336_P001	AT4G38630.1	20059542
AT3G02540.1	Zm00001d028396_P001	AT4G38630.1	20059542
AT3G02540.1	Zm00001d040834_P001	AT4G38630.1	20059542
AT3G02540.1	Zm00001d047941_P001	AT4G38630.1	20059542
AT5G38470.1	Zm00001d024336_P001	AT4G38630.1	20059542
AT5G38470.1	Zm00001d028396_P001	AT4G38630.1	20059542
AT5G38470.1	Zm00001d040834_P001	AT4G38630.1	20059542
AT5G38470.1	Zm00001d047941_P001	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG35597	Sorghum	cytosol	71.24	79.65
Os09t0407200-01	Rice	cytosol	58.88	66.84
TraesCS5A01G204200.1	Wheat	cytosol	58.43	65.82
TraesCS5B01G204000.1	Wheat	cytosol	57.3	64.56
TraesCS5D01G211900.1	Wheat	cytosol	57.3	64.56
GSMUA_Achr9P15580_001	Banana	cytosol	29.89	60.18
HORVU5Hr1G060920.1	Barley	mitochondrion	57.98	59.58
Solyc02g063130.2.1	Tomato	cytosol, extracellular	51.24	59.53
PGSC0003DMT400062159	Potato	cytosol	50.34	58.03
KRH75377	Soybean	cytosol, nucleus	51.01	57.91
GSMUA_Achr5P05860_001	Banana	cytosol	51.01	57.91
CDY01661	Canola	cytosol	48.76	57.41
Bra028184.1-P	Field mustard	cytosol	48.54	57.14
VIT_14s0006g03040.t01	Wine grape	cytosol	48.76	56.96
PGSC0003DMT400032941	Potato	cytosol	49.89	56.92
KRH45279	Soybean	cytosol	51.24	56.86
VIT_01s0011g03410.t01	Wine grape	cytosol	50.56	56.68
Zm00001d020419_P003	Maize	cytosol	58.2	56.67
Solyc02g085840.2.1	Tomato	cytosol	49.44	56.56
AT5G38470.1	Thale cress	cytosol	47.87	56.35
CDX74522	Canola	cytosol	48.09	56.32
KRG90804	Soybean	cytosol	50.56	55.97
Bra028408.1-P	Field mustard	cytosol	47.87	55.76
CDY58121	Canola	cytosol	48.09	55.73
CDX67404	Canola	cytosol	47.19	54.97
KRH35965	Soybean	cytosol	50.11	54.66
GSMUA_Achr3P07380_001	Banana	cytosol	49.89	54.28
CDX74251	Canola	cytosol	48.31	53.62
Zm00001d037326_P001	Maize	cytosol	48.31	53.48
Bra001050.1-P	Field mustard	cytosol	47.64	52.87
Solyc04g007120.2.1	Tomato	cytosol, plastid	48.54	52.81
AT3G02540.1	Thale cress	cytosol	49.44	52.51
CDX91998	Canola	cytosol	47.42	52.36
KRH01763	Soybean	cytosol	44.04	52.27
Zm00001d045665_P003	Maize	cytosol	47.64	51.71
AT5G16090.1	Thale cress	cytosol	18.88	49.12
Zm00001d053738_P001	Maize	cytosol	37.53	45.38
CDY26493	Canola	cytosol	27.87	34.93
CDX69474	Canola	cytosol	27.19	33.15
Bra008649.1-P	Field mustard	cytosol	25.62	33.14
CDY26494	Canola	nucleus	19.55	32.34
CDY26496	Canola	cytosol	24.94	30.92
CDX69472	Canola	cytosol	23.6	29.58
Bra008647.1-P	Field mustard	cytosol	23.6	29.58
CDY26495	Canola	cytosol	10.11	23.68
Bra008648.1-P	Field mustard	cytosol	24.94	17.7
CDX69473	Canola	cytosol	25.17	17.0

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	EntrezGene:100283179	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	UniProt:A0A1D6EPM8
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0006289	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0019538	GO:GO:0043161	InterPro:IPR000626	InterPro:IPR015940	InterPro:IPR036353	ProteinID:ONM21729.1
PFAM:PF00240	PFAM:PF00627	PFAM:PF09280	PRINTS:PR01839	PFscan:PS50030	PFscan:PS50053
PANTHER:PTHR10621	PANTHER:PTHR10621:SF7	InterPro:Rad23	SMART:SM00165	SMART:SM00213	SMART:SM00727
SUPFAM:SSF101238	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd	TIGRFAMs:TIGR00601	InterPro:UBA
InterPro:UBA-like_sf	UniParc:UPI0008435257	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	InterPro:XPC-bd	InterPro:XPC-bd_sf
EnsemblPlantsGene:Zm00001d005732	EnsemblPlants:Zm00001d005732_P001	EnsemblPlants:Zm00001d005732_T001	SEG:seg	:	:

Description

Ubiquitin receptor RAD23c

Coordinates

chr2:+:185158331..185164465

Molecular Weight (calculated)

48660.9 Da

IEP (calculated)

4.413

GRAVY (calculated)

-0.198

Length

445 amino acids

Sequence
(BLAST)

001: MKVSVKTLKG SSFQIEVEPT DKVAAVKKVI ENMQEQASYP ADQQVLIHQG KVLSDDTTLE ENQVTENNFL VIMLRQVAYL FVFLLIRQYC IYGCKGYCEF
101: GMSTISSKCY ISYHSTIVTF HRTRDHQVQH RLRQLRIRSP EAPPTQTVPV VPPQTSAAPA APAPIVPVSA LAATATASAA PAVAVSTEAD SYGQAASNLV
201: AGSNLEGTIQ SILEMGGGIW DRDTVLRALR VAYNNPERAV EYLYSGIPEQ MDVPTSPPSI QPVNPVQAAQ AAQTAAPSGP NANPLDLFPQ SLPNASANAG
301: TGNLDVLRNN VQFQNLLGLV QANPQILQPL LQELGKQNPQ VMQLIQENQA EFMRMINEPL EGDEENEMML DQMADAAETI AVTPEENEAI LRLEGMGFDR
401: ALVLEVFFAC NKNEQLTANY LLDHMHEFDN DDGLGGPPLS CERRL

Best Arabidopsis Sequence Match ( AT1G79650.1 )
(BLAST)

001: MKLTVKTLKG SHFEIRVLPS DTIMAVKKNI EDSQGKDNYP CGQQLLIHNG KVLKDETSLV ENKVTEEGFL VVMLSKSKSG GSAGQASVQT SSVSQPVSAT
101: TSSTKPAAPS TTQSSPVPAS PIPAQEQPAA QTDTYGQAAS TLVSGSSLEQ MVQQIMEMGG GSWDKETVTR ALRAAYNNPE RAVDYLYSGI PQTAEVAVPV
201: PEAQIAGSGA APVAPASGGP NSSPLDLFPQ ETVAAAGSGD LGTLEFLRNN DQFQQLRTMV HSNPQILQPM LQELGKQNPQ LLRLIQENQA EFLQLVNEPY
301: EGSDGEGDMF DQPEQEMPHA INVTPAEQEA IQRLEAMGFD RALVIEAFLA CDRNEELAAN YLLENSGDFE D

Arabidopsis Description

RAD23Rad23 UV excision repair protein family [Source:UniProtKB/TrEMBL;Acc:F4IF85]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.