Factsheet for Bra008648.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69473	Canola	cytosol	69.86	66.46
Bra008649.1-P	Field mustard	cytosol	29.51	53.78
AT5G16090.1	Thale cress	cytosol	13.56	49.71
Bra008647.1-P	Field mustard	cytosol	26.63	47.04
Os02t0465000-00	Rice	cytosol	5.58	38.04
GSMUA_Achr9P15590_001	Banana	cytosol	8.29	36.62
Bra028184.1-P	Field mustard	cytosol	20.41	33.86
GSMUA_Achr5P05860_001	Banana	cytosol	20.89	33.42
Bra001050.1-P	Field mustard	cytosol	21.21	33.17
Bra028408.1-P	Field mustard	cytosol	20.1	32.98
GSMUA_Achr3P07380_001	Banana	cytosol	19.78	30.32
GSMUA_Achr9P15580_001	Banana	cytosol	10.69	30.32
TraesCS5A01G204200.1	Wheat	cytosol	18.82	29.87
Os09t0407200-01	Rice	cytosol	18.66	29.85
KXG35597	Sorghum	cytosol	18.82	29.65
TraesCS5D01G211900.1	Wheat	cytosol	18.66	29.62
TraesCS5B01G204000.1	Wheat	cytosol	18.66	29.62
Zm00001d037326_P001	Maize	cytosol	18.82	29.35
Os06t0264300-01	Rice	cytosol, nucleus, plastid	19.3	29.3
TraesCS7D01G209100.1	Wheat	cytosol	18.98	29.24
TraesCS7B01G113500.1	Wheat	cytosol	18.82	28.99
KXG19738	Sorghum	cytosol	18.82	28.92
Os08t0430200-01	Rice	cytosol	18.66	28.82
Zm00001d045665_P003	Maize	cytosol	18.82	28.78
Bra026728.1-P	Field mustard	cytosol	16.43	28.69
TraesCS7A01G206300.1	Wheat	cytosol	18.5	28.43
Bra026076.1-P	Field mustard	cytosol	16.59	28.18
HORVU5Hr1G060920.1	Barley	mitochondrion	18.82	27.25
Zm00001d005732_P001	Maize	cytosol	17.7	24.94
HORVU7Hr1G042100.8	Barley	cytosol	16.43	24.52
Zm00001d020419_P003	Maize	cytosol	17.54	24.07
Bra003599.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	14.99	21.86

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	EnsemblPlantsGene:Bra008648	EnsemblPlants:Bra008648.1
EnsemblPlants:Bra008648.1-P	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006289	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0019538	GO:GO:0043161	InterPro:IPR000626	InterPro:IPR015940	InterPro:IPR036353
UniProt:M4CWQ1	PFAM:PF00240	PFAM:PF00627	PRINTS:PR01839	PFscan:PS50030	PFscan:PS50053
PANTHER:PTHR10621	PANTHER:PTHR10621:SF8	InterPro:Rad23	SMART:SM00165	SMART:SM00213	SUPFAM:SSF101238
SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0002544C27	InterPro:Ubiquitin-like_domsf
InterPro:Ubiquitin_dom	InterPro:XPC-bd_sf	SEG:seg	:	:	:

Description

AT3G02540 (E=8e-024) RAD23-3 | RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3); damaged DNA binding

Coordinates

chrA10:+:13227286..13232468

Molecular Weight (calculated)

70809.3 Da

IEP (calculated)

4.284

GRAVY (calculated)

-0.628

Length

627 amino acids

Sequence
(BLAST)

001: MKIFVKTLKG DRFEIQVNLE DSVADVKKNI ETVMGVTAAE QMLIHKGKVL EDETTMEANE VSEKSIIAVM KRKHASTVTS TSSASLKPQV QAAHPSSTAS
101: NMTYESISES GIQQILEMVS GTWSREAVAY ALYFASNDLD KAVEYLYFGL PEQSEDPHKT EEHTQEPEAS QDAIQEWSLD ALRNTPEEIL EVIEEHNPQL
201: VQFILDNKAD FLRLVLDQPQ EHQDDDVLHF QSNEPNNGGE SGNQVGKSEE TEVEQPQADQ TNKPNNGDGD NQVGGESEET EVETAKDTEA KTRVEAEIEC
301: LEKQFTRKFV TDGDSSKQYL AGFLELKSFL SPVKEKMKIF VKTLKGARFE IQVKPEDSVA DVKKNIETVL GVNAYPAAEQ RLIHKGKVLK DETTVEANNV
401: SEKSTIGVMK YESISENNIQ WILEMSGGEW ERDLVEDALY LAYNDIDKAV EYIYFGLPVD SEYPSITEEL LVQIEDLFIT EGETHQEPDE RPSAADLEQS
501: LDFARYTQEY DREYLRALAR SHPSIVKDFV EMVHEDNPLF FQFIRDNKAD ILRLLREGGT GGNQVGESKE TEVEVVTPED YELIERLEAL GFERGDAAVA
601: YFACNRNLQV AANHLLGYKH KHEPRRE

Best Arabidopsis Sequence Match ( AT5G38470.2 )
(BLAST)

001: MKIFVKTLSG SNFEIEVKPA DKVSDVKTAI ETVKGAEYPA AKQMLIHQGK VLKDETTLEE NNVVENSFIV IMLSKTKASP SGASTASAPA PSATQPQTVA
101: TPQVSAPTAS VPVPTSGTAT AAAPATAASV QTDVYGQAAS NLVAGTTLES TVQQILDMGG GSWDRDTVVR ALRAAFNNPE RAVEYLYSGI PAQAEIPPVA
201: QAPATGEQAA NPLAQPQQAA APAAATGGPN ANPLNLFPQG MPAADAGAGA GNLDFLRNSQ QFQALRAMVQ ANPQILQPML QELGKQNPQL VRLIQEHQAD
301: FLRLINEPVE GEEWECYGTV GSSNATSCYR YT

Arabidopsis Description

RAD23DUbiquitin receptor RAD23d [Source:UniProtKB/Swiss-Prot;Acc:Q84L30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.