Factsheet for Bra026728.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010735.1-P
Bra033573.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16190.1	Bra010735.1-P	AT4G38630.1	20059542
AT1G16190.1	Bra033573.1-P	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52848	Canola	cytosol	100.0	100.0
AT1G16190.1	Thale cress	cytosol	82.17	80.16
HORVU6Hr1G029720.1	Barley	cytosol, mitochondrion, nucleus	11.7	77.78
Bra026076.1-P	Field mustard	cytosol	79.67	77.51
KRH09619	Soybean	cytosol, nucleus, plasma membrane	39.0	67.31
Solyc03g117780.2.1	Tomato	cytosol	67.13	65.85
PGSC0003DMT400036871	Potato	cytosol	67.13	65.67
KRH23694	Soybean	cytosol	66.85	65.4
KRH47002	Soybean	cytosol, nucleus, plastid	66.02	65.29
VIT_09s0018g01400.t01	Wine grape	cytosol	71.59	62.53
KRH44654	Soybean	cytosol, nucleus, plastid	66.02	62.2
TraesCS6A01G149500.1	Wheat	cytosol	61.84	60.49
Os02t0179300-01	Rice	plasma membrane	62.12	60.43
TraesCS6D01G138800.2	Wheat	cytosol	61.56	60.22
TraesCS6B01G177400.1	Wheat	cytosol	61.28	59.95
Bra003599.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	71.59	59.77
Zm00001d053738_P001	Maize	cytosol	60.72	59.24
EES04633	Sorghum	cytosol	59.89	58.27
GSMUA_Achr1P25580_001	Banana	cytosol	61.56	57.55
GSMUA_Achr7P05130_001	Banana	endoplasmic reticulum	27.58	56.9
HORVU6Hr1G029760.4	Barley	cytosol	53.76	56.43
GSMUA_Achr4P20500_001	Banana	cytosol	61.0	56.3
GSMUA_Achr7P05120_001	Banana	cytosol	39.55	52.01
Bra028184.1-P	Field mustard	cytosol	52.37	49.74
Bra028408.1-P	Field mustard	cytosol	51.81	48.69
Bra001050.1-P	Field mustard	cytosol	50.42	45.14
Bra008649.1-P	Field mustard	cytosol	30.36	31.69
Bra008647.1-P	Field mustard	cytosol	25.35	25.63
Bra008648.1-P	Field mustard	cytosol	28.69	16.43

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	EnsemblPlantsGene:Bra026728	EnsemblPlants:Bra026728.1
EnsemblPlants:Bra026728.1-P	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006289	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0019538	GO:GO:0043161	InterPro:IPR000626	InterPro:IPR015940	InterPro:IPR036353
UniProt:M4ED68	PFAM:PF00240	PFAM:PF00627	PFAM:PF09280	PRINTS:PR01839	PFscan:PS50030
PFscan:PS50053	PANTHER:PTHR10621	PANTHER:PTHR10621:SF26	InterPro:Rad23	SMART:SM00165	SMART:SM00213
SMART:SM00727	SUPFAM:SSF101238	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd	TIGRFAMs:TIGR00601
InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0002542C51	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	InterPro:XPC-bd
InterPro:XPC-bd_sf	SEG:seg	:	:	:	:

Description

AT1G16190 (E=3e-161) | DNA repair protein RAD23, putative

Coordinates

chrA09:-:33423615..33425938

Molecular Weight (calculated)

38724.4 Da

IEP (calculated)

4.142

GRAVY (calculated)

-0.406

Length

359 amino acids

Sequence
(BLAST)

001: MKLTVKTLKG SHFEIRVLPT DTIMAVKKNI EDSQSKDNYP CGQQLLIHNG KVLKDETTLV ENKVTEEGFL VVMLSKSKTA SSAGPSSAQP TSTTTSSAMP
101: AAASTTHSIP VPASVSTLAQ EQPAAPSDTN AQAASTLASG SSTEQMVQQI MEMGGGSWDK ETVARALRAA YNNPERAVDY LYSGIPERET VPLTNISGAD
201: LAAPPTSGGP NSSPLDLFPQ EAEAGAGELG TLDFLRGNDQ FQQLRSMVNS NPQILQPMLQ ELGKQNPQLL RLIQENQAEF LQLINEPYEG SDGEMDILDQ
301: PEQEMPHAVN VTPAEQEAIQ RLEAMGFDRA LVIEAFLACD RNEELAANYL LENSADFED

Best Arabidopsis Sequence Match ( AT1G16190.1 )
(BLAST)

001: MKLTVKTLKG SHFEIRVLPT DTIMAVKKNI EDSQSKDNYP CGQQLLIHNG KVLKDETTLV ENKVTEEGFL VVMLSKSKTA SSAGPSSTQP TSTTTSTISS
101: TTLAAPSTTQ SIAVPASNST PVQEQPTAQS DTYGQAASTL VSGSSIEQMV QQIMEMGGGS WDKETVTRAL RAAYNNPERA VDYLYSGIPE TVTIPATNLS
201: GVGSGRELTA PPPSGGPNSS PLDLFPQEAV SDAAGGDLGT LEFLRGNDQF QQLRSMVNSN PQILQPMLQE LGKQNPQLLR LIQENQAEFL QLLNEPYEGS
301: DGDVDIFDQP DQEMPHSVNV TPEEQESIER LEAMGFDRAI VIEAFLSCDR NEELAANYLL EHSADFED

Arabidopsis Description

RAD23ARAD23A [Source:UniProtKB/TrEMBL;Acc:A0A178W4Q3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.