Factsheet for VIT_09s0018g01400.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g00060.t01
VIT_04s0023g03620.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16190.1	VIT_04s0008g00060.t01	AT4G38630.1	20059542
AT1G16190.1	VIT_04s0023g03620.t01	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G029720.1	Barley	cytosol, mitochondrion, nucleus	10.71	81.48
KRH09619	Soybean	cytosol, nucleus, plasma membrane	37.71	74.52
KRH23694	Soybean	cytosol	64.96	72.75
KRH47002	Soybean	cytosol, nucleus, plastid	63.99	72.45
Solyc03g117780.2.1	Tomato	cytosol	63.99	71.86
PGSC0003DMT400036871	Potato	cytosol	63.99	71.66
Bra026728.1-P	Field mustard	cytosol	62.53	71.59
CDY52848	Canola	cytosol	62.53	71.59
CDX81753	Canola	cytosol, nucleus, plastid	62.53	70.8
KRH44654	Soybean	cytosol, nucleus, plastid	65.45	70.6
AT1G79650.4	Thale cress	cytosol	66.42	69.11
AT1G16190.1	Thale cress	cytosol	61.56	68.75
CDY33351	Canola	cytosol, nucleus, plastid	58.88	67.22
CDY35071	Canola	cytosol	58.39	65.04
Bra026076.1-P	Field mustard	cytosol	58.39	65.04
CDX79333	Canola	cytosol	60.83	64.43
GSMUA_Achr7P05130_001	Banana	endoplasmic reticulum	26.52	62.64
Zm00001d053738_P001	Maize	cytosol	55.96	62.5
GSMUA_Achr1P25580_001	Banana	cytosol	57.91	61.98
TraesCS6A01G149500.1	Wheat	cytosol	55.23	61.85
TraesCS6B01G177400.1	Wheat	cytosol	55.23	61.85
TraesCS6D01G138800.2	Wheat	cytosol	55.23	61.85
Os02t0179300-01	Rice	plasma membrane	55.47	61.79
EES04633	Sorghum	cytosol	54.99	61.25
GSMUA_Achr4P20500_001	Banana	cytosol	57.66	60.93
CDX67983	Canola	plastid	62.53	60.05
Bra003599.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	61.31	58.6
HORVU6Hr1G029760.4	Barley	cytosol	48.66	58.48
GSMUA_Achr7P05120_001	Banana	cytosol	36.25	54.58
VIT_01s0011g03410.t01	Wine grape	cytosol	50.85	52.64
VIT_14s0006g03040.t01	Wine grape	cytosol	47.69	51.44

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	EntrezGene:100267246	wikigene:100267246	MapMan:19.2.4.4.1	Gene3D:3.10.20.90
ProteinID:CCB49702	ProteinID:CCB49702.1	UniProt:F6HBT7	EMBL:FN595513	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003684	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0043161
InterPro:IPR000626	InterPro:IPR015940	InterPro:IPR036353	EntrezGene:LOC100267246	wikigene:LOC100267246	PFAM:PF00240
PFAM:PF00627	PFAM:PF09280	PRINTS:PR01839	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10621
PANTHER:PTHR10621:SF26	InterPro:Rad23	SMART:SM00165	SMART:SM00213	SMART:SM00727	SUPFAM:SSF101238
SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd	TIGR:TC70139	TIGRFAMs:TIGR00601	InterPro:UBA
InterPro:UBA-like_sf	UniParc:UPI0002109876	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	ArrayExpress:VIT_09s0018g01400	EnsemblPlantsGene:VIT_09s0018g01400
EnsemblPlants:VIT_09s0018g01400.t01	InterPro:XPC-bd	InterPro:XPC-bd_sf	RefSeq:XP_002270323	RefSeq:XP_002270323.2	RefSeq:XP_010655132.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr9:+:18462303..18484688

Molecular Weight (calculated)

43286.9 Da

IEP (calculated)

4.352

GRAVY (calculated)

-0.218

Length

411 amino acids

Sequence
(BLAST)

001: MKLTVKTLKG SHFEIRVQPS DTVMAVKKNI EDVQGKDNYP CGQQLLIHNG KVLKDETTLV ENKVTEDGFL VVMLSKSKSI GATGTSSAQS ASTPAPAAIP
101: TPAPAPIPTP APAPIATPAP APIATPAPAP NPTAAAEAPV NAQAPRSIST SEVATDSVLA DTYGQAASNI VSANHLEQTI QQIMDIGGGT WDKETVTRAL
201: RAAYNNPERA VDYLYSGIPE AAEVAVPVAH FPADQETGGI NSSTAAVAGS GAAPAAPASG VPNSSPLNMF PQETLSGAAG GGLGSLEFLR NNHQFQALRA
301: MVQANPQILQ PMLQELGKQN PHLLRLIQEH HAEFLQLINE PLEGSEGDIF DQPEQELPHA INVTPAEQEA IERLEAMGFD RALVIEAFLA CDRNEELAVN
401: YLLENAGDYE D

Best Arabidopsis Sequence Match ( AT1G79650.1 )
(BLAST)

001: MKLTVKTLKG SHFEIRVLPS DTIMAVKKNI EDSQGKDNYP CGQQLLIHNG KVLKDETSLV ENKVTEEGFL VVMLSKSKSG GSAGQASVQT SSVSQPVSAT
101: TSSTKPAAPS TTQSSPVPAS PIPAQEQPAA QTDTYGQAAS TLVSGSSLEQ MVQQIMEMGG GSWDKETVTR ALRAAYNNPE RAVDYLYSGI PQTAEVAVPV
201: PEAQIAGSGA APVAPASGGP NSSPLDLFPQ ETVAAAGSGD LGTLEFLRNN DQFQQLRTMV HSNPQILQPM LQELGKQNPQ LLRLIQENQA EFLQLVNEPY
301: EGSDGEGDMF DQPEQEMPHA INVTPAEQEA IQRLEAMGFD RALVIEAFLA CDRNEELAAN YLLENSGDFE D

Arabidopsis Description

RAD23Rad23 UV excision repair protein family [Source:UniProtKB/TrEMBL;Acc:F4IF85]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.