CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH08049
KRH28809
KRH69766
KRH76642

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16190.1	KRH08049	AT4G38630.1	20059542
AT1G16190.1	KRH28809	AT4G38630.1	20059542
AT1G16190.1	KRH69766	AT4G38630.1	20059542
AT1G16190.1	KRH76642	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G029720.1	Barley	cytosol, mitochondrion, nucleus	21.15	81.48
GSMUA_Achr7P05130_001	Banana	endoplasmic reticulum	44.23	52.87
KRH23694	Soybean	cytosol	81.73	46.32
KRH47002	Soybean	cytosol, nucleus, plastid	77.88	44.63
KRH44654	Soybean	cytosol, nucleus, plastid	77.88	42.52
PGSC0003DMT400036871	Potato	cytosol	71.15	40.33
Solyc03g117780.2.1	Tomato	cytosol	68.75	39.07
Bra026728.1-P	Field mustard	cytosol	67.31	39.0
CDY52848	Canola	cytosol	67.31	39.0
CDY33351	Canola	cytosol, nucleus, plastid	66.83	38.61
CDX81753	Canola	cytosol, nucleus, plastid	67.31	38.57
AT1G79650.4	Thale cress	cytosol	72.6	38.23
AT1G16190.1	Thale cress	cytosol	67.31	38.04
HORVU6Hr1G029760.4	Barley	cytosol	62.02	37.72
VIT_09s0018g01400.t01	Wine grape	cytosol	74.52	37.71
CDX79333	Canola	cytosol	68.75	36.86
Os02t0179300-01	Rice	plasma membrane	64.9	36.59
CDY35071	Canola	cytosol	64.42	36.31
Bra026076.1-P	Field mustard	cytosol	64.42	36.31
TraesCS6D01G138800.2	Wheat	cytosol	63.94	36.24
TraesCS6B01G177400.1	Wheat	cytosol	63.94	36.24
TraesCS6A01G149500.1	Wheat	cytosol	63.94	36.24
Zm00001d053738_P001	Maize	cytosol	61.06	34.51
EES04633	Sorghum	cytosol	61.06	34.42
GSMUA_Achr1P25580_001	Banana	cytosol	62.98	34.11
GSMUA_Achr4P20500_001	Banana	cytosol	63.46	33.93
CDX67983	Canola	plastid	68.75	33.41
KRH75377	Soybean	cytosol, nucleus	62.5	33.16
Bra003599.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	67.79	32.79
KRH45279	Soybean	cytosol	61.06	31.67
KRG90804	Soybean	cytosol	59.62	30.85
KRH35965	Soybean	cytosol	59.62	30.39
KRH01763	Soybean	cytosol	47.12	26.13
GSMUA_Achr7P05120_001	Banana	cytosol	25.48	19.41

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	MapMan:19.2.4.4.1	EMBL:ACUP02009104	EnsemblPlantsGene:GLYMA_15G002000	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
GO:GO:0043161	InterPro:IPR015940	InterPro:IPR036353	UniProt:K7M8N8	EnsemblPlants:KRH09619	ProteinID:KRH09619
ProteinID:KRH09619.1	PFAM:PF00627	PFAM:PF09280	PRINTS:PR01839	PFscan:PS50030	PANTHER:PTHR10621
PANTHER:PTHR10621:SF26	InterPro:Rad23	SMART:SM00165	SUPFAM:SSF101238	SUPFAM:SSF46934	InterPro:UBA
InterPro:UBA-like_sf	UniParc:UPI0002968F62	InterPro:XPC-bd	InterPro:XPC-bd_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr15:+:210513..212585

Molecular Weight (calculated)

22536.2 Da

IEP (calculated)

3.997

GRAVY (calculated)

-0.357

Length

208 amino acids

Sequence
(BLAST)

001: MNVTTDTYGQ AASNLVAGSS LEQTIQQIMD LGGGSWDRDT VSRALRAAYN NPKRAVDYLY SRIPEAAEIA VPAAPYPISQ TTETGGVTAG AVSGFQALRS
101: MVQSNPQILQ PVLQELGKQN LSLSRLIQEH HGEFLQLIND PVEGSEGDIF DQPEQDMPHA INVTPAEQEA IGRLEAMGFD RASVIEACDR DEQLAANYLL
201: ENAGDFED

Best Arabidopsis Sequence Match ( AT1G16190.1 )
(BLAST)

001: MKLTVKTLKG SHFEIRVLPT DTIMAVKKNI EDSQSKDNYP CGQQLLIHNG KVLKDETTLV ENKVTEEGFL VVMLSKSKTA SSAGPSSTQP TSTTTSTISS
101: TTLAAPSTTQ SIAVPASNST PVQEQPTAQS DTYGQAASTL VSGSSIEQMV QQIMEMGGGS WDKETVTRAL RAAYNNPERA VDYLYSGIPE TVTIPATNLS
201: GVGSGRELTA PPPSGGPNSS PLDLFPQEAV SDAAGGDLGT LEFLRGNDQF QQLRSMVNSN PQILQPMLQE LGKQNPQLLR LIQENQAEFL QLLNEPYEGS
301: DGDVDIFDQP DQEMPHSVNV TPEEQESIER LEAMGFDRAI VIEAFLSCDR NEELAANYLL EHSADFED

Arabidopsis Description

RAD23ARAD23A [Source:UniProtKB/TrEMBL;Acc:A0A178W4Q3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.