Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr11P... | |
| GSMUA_Achr2P11290_001 | |
| GSMUA_Achr4P25580_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G16190.1 | GSMUA_Achr11P... | AT4G38630.1 | 20059542 |
| AT1G16190.1 | GSMUA_Achr2P11290_001 | AT4G38630.1 | 20059542 |
| AT1G16190.1 | GSMUA_Achr4P25580_001 | AT4G38630.1 | 20059542 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P25580_001 | Banana | cytosol | 66.67 | 47.4 |
| GSMUA_Achr4P20500_001 | Banana | cytosol | 66.67 | 46.79 |
| EES04633 | Sorghum | cytosol | 61.9 | 45.8 |
| Zm00001d053738_P001 | Maize | cytosol | 61.17 | 45.38 |
| TraesCS6D01G138800.2 | Wheat | cytosol | 60.81 | 45.23 |
| TraesCS6A01G149500.1 | Wheat | cytosol | 60.44 | 44.96 |
| TraesCS6B01G177400.1 | Wheat | cytosol | 60.44 | 44.96 |
| Os02t0179300-01 | Rice | plasma membrane | 58.61 | 43.36 |
| KRH47002 | Soybean | cytosol, nucleus, plastid | 56.04 | 42.15 |
| KRH23694 | Soybean | cytosol | 56.04 | 41.69 |
| Solyc03g117780.2.1 | Tomato | cytosol | 54.95 | 40.98 |
| KRH44654 | Soybean | cytosol, nucleus, plastid | 57.14 | 40.94 |
| PGSC0003DMT400036871 | Potato | cytosol | 54.58 | 40.6 |
| AT1G16190.1 | Thale cress | cytosol | 53.48 | 39.67 |
| CDY52848 | Canola | cytosol | 52.01 | 39.55 |
| Bra026728.1-P | Field mustard | cytosol | 52.01 | 39.55 |
| HORVU6Hr1G029760.4 | Barley | cytosol | 49.45 | 39.47 |
| CDX81753 | Canola | cytosol, nucleus, plastid | 52.01 | 39.12 |
| GSMUA_Achr9P15590_001 | Banana | cytosol | 20.15 | 38.73 |
| CDX79333 | Canola | cytosol | 52.01 | 36.6 |
| CDY35071 | Canola | cytosol | 49.45 | 36.59 |
| CDY33351 | Canola | cytosol, nucleus, plastid | 47.99 | 36.39 |
| Bra026076.1-P | Field mustard | cytosol | 49.08 | 36.31 |
| VIT_09s0018g01400.t01 | Wine grape | cytosol | 54.58 | 36.25 |
| AT1G79650.4 | Thale cress | cytosol | 52.38 | 36.2 |
| CDX67983 | Canola | plastid | 50.92 | 32.48 |
| Bra003599.1-P | Field mustard | cytosol, mitochondrion, plasma membrane, plastid | 49.45 | 31.4 |
| GSMUA_Achr5P05860_001 | Banana | cytosol | 43.59 | 30.36 |
| GSMUA_Achr3P07380_001 | Banana | cytosol | 45.42 | 30.32 |
| KRH09619 | Soybean | cytosol, nucleus, plasma membrane | 19.41 | 25.48 |
| GSMUA_Achr9P15580_001 | Banana | cytosol | 17.58 | 21.72 |
| GSMUA_Achr7P05130_001 | Banana | endoplasmic reticulum | 5.86 | 9.2 |
| HORVU6Hr1G029720.1 | Barley | cytosol, mitochondrion, nucleus | 0.37 | 1.85 |
Protein Annotations
| Gene3D:1.10.8.10 | MapMan:19.2.4.4.1 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006289 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr7G05120_001 |
| EnsemblPlants:GSMUA_Achr7P05120_001 | EnsemblPlants:GSMUA_Achr7T05120_001 | InterPro:IPR000626 | InterPro:IPR015940 | UniProt:M0TEV2 | PFAM:PF00240 |
| PFAM:PF00627 | PFscan:PS50030 | PFscan:PS50053 | PANTHER:PTHR10621 | PANTHER:PTHR10621:SF26 | InterPro:Rad23 |
| SMART:SM00165 | SMART:SM00213 | SUPFAM:SSF46934 | SUPFAM:SSF54236 | TIGRFAMs:TIGR00601 | InterPro:UBA |
| InterPro:UBA-like_sf | UniParc:UPI0002960B53 | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | SEG:seg | : |
Description
Putative DNA repair protein RAD23-1 [Source:GMGC_GENE;Acc:GSMUA_Achr7G05120_001]
Coordinates
chr7:+:3832750..3836345
Molecular Weight (calculated)
28426.5 Da
IEP (calculated)
5.029
GRAVY (calculated)
-0.317
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLTVKTLKG THFEIRVQPN DTIMAVKKNI EQIQGKDSYP WGQQLLIHNG KVLKDETTLE ENKVKEDGFL VVMLSKSKAA GSSGSSSAQP SATSAVQHPT
101: PKEAPTQVPV QAPPQVAAQA APPTPVPASS SIGSQGSNLE VSADTYGQAA SNLIAGSNLE QMVSQLLEMG GGNWDRDTVL LALRAAYNNP ERAVEYLYSG
201: IPATTEIAVP VDPLPLSQAS SQGANPTDAT APGFLSGLPN SAPLNMFPQG NTNPGVGAGG GSLDFLRNNP QAC
101: PKEAPTQVPV QAPPQVAAQA APPTPVPASS SIGSQGSNLE VSADTYGQAA SNLIAGSNLE QMVSQLLEMG GGNWDRDTVL LALRAAYNNP ERAVEYLYSG
201: IPATTEIAVP VDPLPLSQAS SQGANPTDAT APGFLSGLPN SAPLNMFPQG NTNPGVGAGG GSLDFLRNNP QAC
001: MKLTVKTLKG SHFEIRVLPS DTIMAVKKNI EDSQGKDNYP CGQQLLIHNG KVLKDETSLV ENKVTEEGFL VVMLSKSKSG GSAGQASVQT SSVSQPVSAT
101: TSSTKPAAPS TTQSSPVPAS PIPAQEQPAA QTDTYGQAAS TLVSGSSLEQ MVQQIMEMGG GSWDKETVTR ALRAAYNNPE RAVDYLYSGI PQTAEVAVPV
201: PEAQIAGSGA APVAPASGGP NSSPLDLFPQ ETVAAAGSGD LGTLEFLRNN DQELGKQNPQ LLRLIQENQA EFLQLVNEPY EGSDGEGDMF DQPEQEMPHA
301: INVTPAEQEA IQRLEAMGFD RALVIEAFLA CDRNEELAAN YLLENSGDFE D
101: TSSTKPAAPS TTQSSPVPAS PIPAQEQPAA QTDTYGQAAS TLVSGSSLEQ MVQQIMEMGG GSWDKETVTR ALRAAYNNPE RAVDYLYSGI PQTAEVAVPV
201: PEAQIAGSGA APVAPASGGP NSSPLDLFPQ ETVAAAGSGD LGTLEFLRNN DQELGKQNPQ LLRLIQENQA EFLQLVNEPY EGSDGEGDMF DQPEQEMPHA
301: INVTPAEQEA IQRLEAMGFD RALVIEAFLA CDRNEELAAN YLLENSGDFE D
Arabidopsis Description
RAD23Rad23 UV excision repair protein family [Source:UniProtKB/TrEMBL;Acc:F4IF85]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.