Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU4Hr1G063820.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G16190.1 | HORVU4Hr1G063820.1 | AT4G38630.1 | 20059542 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G029720.1 | Barley | cytosol, mitochondrion, nucleus | 15.2 | 96.3 |
| TraesCS6A01G149500.1 | Wheat | cytosol | 94.44 | 88.01 |
| TraesCS6D01G138800.2 | Wheat | cytosol | 94.15 | 87.74 |
| TraesCS6B01G177400.1 | Wheat | cytosol | 93.57 | 87.19 |
| EES04633 | Sorghum | cytosol | 79.53 | 73.71 |
| Zm00001d053738_P001 | Maize | cytosol | 74.85 | 69.57 |
| Os02t0179300-01 | Rice | plasma membrane | 73.68 | 68.29 |
| KRH09619 | Soybean | cytosol, nucleus, plasma membrane | 37.72 | 62.02 |
| GSMUA_Achr7P05130_001 | Banana | endoplasmic reticulum | 28.95 | 56.9 |
| Solyc03g117780.2.1 | Tomato | cytosol | 59.94 | 56.01 |
| KRH47002 | Soybean | cytosol, nucleus, plastid | 58.77 | 55.37 |
| PGSC0003DMT400036871 | Potato | cytosol | 59.36 | 55.31 |
| CDX81753 | Canola | cytosol, nucleus, plastid | 57.89 | 54.55 |
| AT1G16190.1 | Thale cress | cytosol | 58.19 | 54.08 |
| CDY52848 | Canola | cytosol | 56.43 | 53.76 |
| Bra026728.1-P | Field mustard | cytosol | 56.43 | 53.76 |
| GSMUA_Achr4P20500_001 | Banana | cytosol | 60.53 | 53.21 |
| GSMUA_Achr1P25580_001 | Banana | cytosol | 59.36 | 52.86 |
| KRH23694 | Soybean | cytosol | 56.73 | 52.86 |
| CDY33351 | Canola | cytosol, nucleus, plastid | 55.26 | 52.5 |
| KRH44654 | Soybean | cytosol, nucleus, plastid | 58.19 | 52.23 |
| Bra026076.1-P | Field mustard | cytosol | 54.97 | 50.95 |
| CDY35071 | Canola | cytosol | 54.68 | 50.68 |
| AT1G79650.4 | Thale cress | cytosol | 58.48 | 50.63 |
| CDX79333 | Canola | cytosol | 56.73 | 50.0 |
| GSMUA_Achr7P05120_001 | Banana | cytosol | 39.47 | 49.45 |
| VIT_09s0018g01400.t01 | Wine grape | cytosol | 58.48 | 48.66 |
| Bra003599.1-P | Field mustard | cytosol, mitochondrion, plasma membrane, plastid | 57.31 | 45.58 |
| CDX67983 | Canola | plastid | 57.02 | 45.56 |
| HORVU5Hr1G060920.1 | Barley | mitochondrion | 42.69 | 33.72 |
| HORVU7Hr1G042100.8 | Barley | cytosol | 40.06 | 32.62 |
Protein Annotations
| Gene3D:1.10.10.540 | Gene3D:1.10.8.10 | MapMan:19.2.4.4.1 | Gene3D:3.10.20.90 | UniProt:A0A287TRH3 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003684 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006289 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0043161 | EnsemblPlantsGene:HORVU6Hr1G029760 | EnsemblPlants:HORVU6Hr1G029760.4 | InterPro:IPR000626 | InterPro:IPR015940 |
| InterPro:IPR036353 | PFAM:PF00240 | PFAM:PF00627 | PFAM:PF09280 | PRINTS:PR01839 | PFscan:PS50030 |
| PFscan:PS50053 | PANTHER:PTHR10621 | PANTHER:PTHR10621:SF26 | InterPro:Rad23 | SMART:SM00165 | SMART:SM00727 |
| SUPFAM:SSF101238 | SUPFAM:SSF46934 | SUPFAM:SSF54236 | InterPro:STI1_HS-bd | TIGRFAMs:TIGR00601 | InterPro:UBA |
| InterPro:UBA-like_sf | UniParc:UPI000B488F86 | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | InterPro:XPC-bd | InterPro:XPC-bd_sf |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:+:122237738..122241895
Molecular Weight (calculated)
36845.0 Da
IEP (calculated)
4.127
GRAVY (calculated)
-0.444
Length
342 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVKKKIEEV QGKDSYPWGQ QLLIQNGKIL KDESTLDENQ VSEDGFLVVI LSKSKASAYS GASSAQPSIT HVTSQAPPVA QPQAPQPQVP STTTSQPERP
101: PAETPSTTVD LAASDLLSGS NPDTMINQIM DMGGGSWDRD KVQRALRAAY NNPERAINYL YTGIPVTAEV AVPVVGQGAN TTDAAPGETG LSGIPNTAPL
201: DLFPQGASHA GGAGGGGSLD FLRNNQQFQA LREMVHTNPQ ILQPMLQELS KQNPQLLRLI QENNDEFLQL LLFEGGDGDF LDQDDQDEIP HAISVTPEEL
301: EAIGRLEAMG FERARVIEAF FACDRNEQLA ANYLLEHAGD EE
101: PAETPSTTVD LAASDLLSGS NPDTMINQIM DMGGGSWDRD KVQRALRAAY NNPERAINYL YTGIPVTAEV AVPVVGQGAN TTDAAPGETG LSGIPNTAPL
201: DLFPQGASHA GGAGGGGSLD FLRNNQQFQA LREMVHTNPQ ILQPMLQELS KQNPQLLRLI QENNDEFLQL LLFEGGDGDF LDQDDQDEIP HAISVTPEEL
301: EAIGRLEAMG FERARVIEAF FACDRNEQLA ANYLLEHAGD EE
001: MKLTVKTLKG SHFEIRVLPS DTIMAVKKNI EDSQGKDNYP CGQQLLIHNG KVLKDETSLV ENKVTEEGFL VVMLSKSKSG GSAGQASVQP VSATTSSTKP
101: AAPSTTQSSP VPASPIPAQE QPAAQTDTYG QAASTLVSGS SLEQMVQQIM EMGGGSWDKE TVTRALRAAY NNPERAVDYL YSGIPQTAEV AVPVPEAQIA
201: GSGAAPVAPA SGGPNSSPLD LFPQETVAAA GSGDLGTLEF LRNNDQFQQL RTMVHSNPQI LQPMLQELGK QNPQLLRLIQ ENQAEFLQLV NEPYEGSDGE
301: GDMFDQPEQE MPHAINVTPA EQEAIQRLEA MGFDRALVIE AFLACDRNEE LAANYLLENS GDFED
101: AAPSTTQSSP VPASPIPAQE QPAAQTDTYG QAASTLVSGS SLEQMVQQIM EMGGGSWDKE TVTRALRAAY NNPERAVDYL YSGIPQTAEV AVPVPEAQIA
201: GSGAAPVAPA SGGPNSSPLD LFPQETVAAA GSGDLGTLEF LRNNDQFQQL RTMVHSNPQI LQPMLQELGK QNPQLLRLIQ ENQAEFLQLV NEPYEGSDGE
301: GDMFDQPEQE MPHAINVTPA EQEAIQRLEA MGFDRALVIE AFLACDRNEE LAANYLLENS GDFED
Arabidopsis Description
RAD23Rad23 UV excision repair protein family [Source:UniProtKB/TrEMBL;Acc:F4IF85]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.