CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79333	Canola	cytosol	75.47	83.25
Bra003599.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	80.61	80.23
HORVU6Hr1G029720.1	Barley	cytosol, mitochondrion, nucleus	9.35	74.07
CDY52848	Canola	cytosol	60.28	71.87
CDX81753	Canola	cytosol, nucleus, plastid	60.75	71.63
CDY33351	Canola	cytosol, nucleus, plastid	59.81	71.11
AT1G79650.4	Thale cress	cytosol	63.78	69.11
KRH09619	Soybean	cytosol, nucleus, plasma membrane	33.41	68.75
PGSC0003DMT400036871	Potato	cytosol	57.48	67.03
CDY35071	Canola	cytosol	57.71	66.94
Solyc03g117780.2.1	Tomato	cytosol	55.84	65.3
KRH23694	Soybean	cytosol	55.84	65.12
KRH47002	Soybean	cytosol, nucleus, plastid	54.67	64.46
VIT_09s0018g01400.t01	Wine grape	cytosol	60.05	62.53
KRH44654	Soybean	cytosol, nucleus, plastid	55.37	62.2
TraesCS6D01G138800.2	Wheat	cytosol	52.1	60.76
Os02t0179300-01	Rice	plasma membrane	52.34	60.7
TraesCS6A01G149500.1	Wheat	cytosol	51.87	60.49
TraesCS6B01G177400.1	Wheat	cytosol	51.87	60.49
Zm00001d053738_P001	Maize	cytosol	51.87	60.33
EES04633	Sorghum	cytosol	50.93	59.08
GSMUA_Achr1P25580_001	Banana	cytosol	51.64	57.55
GSMUA_Achr7P05130_001	Banana	endoplasmic reticulum	23.36	57.47
GSMUA_Achr4P20500_001	Banana	cytosol	51.87	57.07
HORVU6Hr1G029760.4	Barley	cytosol	45.56	57.02
GSMUA_Achr7P05120_001	Banana	cytosol	32.48	50.92
CDY01661	Canola	cytosol	43.22	48.94
CDX74522	Canola	cytosol	43.22	48.68
CDX67404	Canola	cytosol	42.99	48.17
CDY58121	Canola	cytosol	42.76	47.66
CDX74251	Canola	cytosol	41.59	44.39
CDX91998	Canola	cytosol	41.36	43.92
CDY26493	Canola	cytosol	25.7	30.99
CDY26494	Canola	nucleus	19.16	30.48
CDX69474	Canola	cytosol	25.23	29.59
CDY26496	Canola	cytosol	22.2	26.46
CDX69472	Canola	cytosol	21.03	25.35
CDY26495	Canola	cytosol	10.98	24.74
CDX69473	Canola	cytosol	23.36	15.17

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	GO:A0A078BYK8	EnsemblPlants:CDX67983
ProteinID:CDX67983	ProteinID:CDX67983.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006289	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0043161	EnsemblPlantsGene:GSBRNA2T00099198001	InterPro:IPR000626
InterPro:IPR015940	InterPro:IPR036353	PFAM:PF00240	PFAM:PF00627	PFAM:PF09280	PRINTS:PR01839
PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10621	PANTHER:PTHR10621:SF26	InterPro:Rad23	SMART:SM00165
SMART:SM00213	SMART:SM00727	SUPFAM:SSF101238	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd
TIGRFAMs:TIGR00601	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0004EF0EC0	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
InterPro:XPC-bd	InterPro:XPC-bd_sf	SEG:seg	:	:	:

Description

BnaA07g20230D

Coordinates

chrLK031787:+:3194466..3197258

Molecular Weight (calculated)

46564.9 Da

IEP (calculated)

5.283

GRAVY (calculated)

-0.412

Length

428 amino acids

Sequence
(BLAST)

001: MRHVDSTWRS IAAFKIRNAV CHCFNYGRLF CKRRPRSLQL LTAFLGPSIL AGISPSQRRR FHILRTMKLT VKTLMGRQFE IRVQSSDTIM AVKKNIEDSQ
101: GKDNYPCGQQ LLIHNGKVLK DETTLVENKV TEEGFLVVML SKSRTAGSSS GQSSTQPAST STTTTSSTKP AAPTTTQSTA VPASPVPAQE QPAAQTDTHG
201: QAASSLASGN HLEPLVQQLM DMGGGSWDKE TVTRALRAAH NNPERAVDYL YSGIPETAEV AVAGSGAALV PPASGGPNSS PLDLFPQGTV AAAGTGDLGT
301: LEFLRNNDQF QQLRTMVHSN PQILQPMLQE LGKQNPQLLR LIQENQAEFL QLVNEPYEGS DGDADIFDQP EQETPHSINV TQAEQEAIQR LEAMGFDRDL
401: VIEAFLACDR NEELAANYLL ENSGDFAD

Best Arabidopsis Sequence Match ( AT1G79650.1 )
(BLAST)

001: MKLTVKTLKG SHFEIRVLPS DTIMAVKKNI EDSQGKDNYP CGQQLLIHNG KVLKDETSLV ENKVTEEGFL VVMLSKSKSG GSAGQASVQT SSVSQPVSAT
101: TSSTKPAAPS TTQSSPVPAS PIPAQEQPAA QTDTYGQAAS TLVSGSSLEQ MVQQIMEMGG GSWDKETVTR ALRAAYNNPE RAVDYLYSGI PQTAEVAVPV
201: PEAQIAGSGA APVAPASGGP NSSPLDLFPQ ETVAAAGSGD LGTLEFLRNN DQFQQLRTMV HSNPQILQPM LQELGKQNPQ LLRLIQENQA EFLQLVNEPY
301: EGSDGEGDMF DQPEQEMPHA INVTPAEQEA IQRLEAMGFD RALVIEAFLA CDRNEELAAN YLLENSGDFE D

Arabidopsis Description

RAD23Rad23 UV excision repair protein family [Source:UniProtKB/TrEMBL;Acc:F4IF85]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.