CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69474	Canola	cytosol	82.54	80.27
CDX69472	Canola	cytosol	57.75	57.75
CDY26496	Canola	cytosol	58.31	57.66
CDY26494	Canola	nucleus	43.38	57.25
AT5G16090.1	Thale cress	cytosol	24.79	51.46
Os02t0465000-00	Rice	cytosol	9.58	36.96
CDY01661	Canola	cytosol	38.59	36.24
CDY58121	Canola	cytosol	39.15	36.2
CDX67404	Canola	cytosol	38.59	35.86
GSMUA_Achr5P05860_001	Banana	cytosol	39.44	35.71
CDX74522	Canola	cytosol	38.03	35.53
GSMUA_Achr9P15580_001	Banana	cytosol	21.97	35.29
CDX74251	Canola	cytosol	39.72	35.16
CDX91998	Canola	cytosol	39.72	34.99
GSMUA_Achr9P15590_001	Banana	cytosol	13.8	34.51
TraesCS5A01G204200.1	Wheat	cytosol	36.9	33.16
TraesCS5D01G211900.1	Wheat	cytosol	36.9	33.16
TraesCS5B01G204000.1	Wheat	cytosol	36.34	32.66
GSMUA_Achr3P07380_001	Banana	cytosol	37.46	32.52
TraesCS7B01G113500.1	Wheat	cytosol	37.18	32.43
CDY52848	Canola	cytosol	32.68	32.31
TraesCS7D01G209100.1	Wheat	cytosol	36.9	32.19
KXG35597	Sorghum	cytosol	36.06	32.16
Os09t0407200-01	Rice	cytosol	35.49	32.14
TraesCS7A01G206300.1	Wheat	cytosol	36.9	32.11
Os06t0264300-01	Rice	cytosol, nucleus, plastid	37.18	31.96
CDX81753	Canola	cytosol, nucleus, plastid	32.68	31.96
Zm00001d037326_P001	Maize	cytosol	36.06	31.84
CDY35071	Canola	cytosol	32.96	31.71
CDY33351	Canola	cytosol, nucleus, plastid	31.83	31.39
KXG19738	Sorghum	cytosol	36.06	31.37
Os08t0430200-01	Rice	cytosol	35.77	31.28
Zm00001d045665_P003	Maize	cytosol	35.77	30.98
HORVU5Hr1G060920.1	Barley	mitochondrion	36.62	30.02
CDY26495	Canola	cytosol	16.06	30.0
CDX69473	Canola	cytosol	52.96	28.53
CDX79333	Canola	cytosol	30.7	28.09
Zm00001d005732_P001	Maize	cytosol	34.93	27.87
HORVU7Hr1G042100.8	Barley	cytosol	32.96	27.86
CDX67983	Canola	plastid	30.99	25.7
Zm00001d020419_P003	Maize	cytosol	32.68	25.38

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	Gene3D:3.10.20.90	MapMan:35.1	GO:A0A078GPB3	UniProt:A0A078GPB3
EnsemblPlants:CDY26493	ProteinID:CDY26493	ProteinID:CDY26493.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003684	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0043161	EnsemblPlantsGene:GSBRNA2T00035308001
InterPro:IPR000626	InterPro:IPR015940	InterPro:IPR036353	PFAM:PF00240	PFAM:PF00627	PFAM:PF09280
PRINTS:PR01839	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10621	PANTHER:PTHR10621:SF8	InterPro:Rad23
SMART:SM00165	SMART:SM00213	SUPFAM:SSF101238	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:UBA
InterPro:UBA-like_sf	UniParc:UPI0004EDCAA3	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	InterPro:XPC-bd	InterPro:XPC-bd_sf
SEG:seg	:	:	:	:	:

Description

BnaC09g41750DBnaC09g41750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GPB3]

Coordinates

chrLK032190:-:471524..473806

Molecular Weight (calculated)

39277.7 Da

IEP (calculated)

4.312

GRAVY (calculated)

-0.554

Length

355 amino acids

Sequence
(BLAST)

001: MKILVKTLKG ARFEIQVNLE DSVGDVKKNI ETVMGVTAYP AAEQVLIHKG KVLKDETTVE ANNVSEKSVI GVIKKKPAST GTSTASASLT ALVHAAHPSS
101: TATETPVTPT EPAWDAASNG NYESISESNI QQILEMVRGA WSREAVAYAL CLAYNDLDKA LEYIYFGIPV QSEDHYTTEG TQEQTQEPEE TDLEWSLDSL
201: RHTPEFEYLR PLVQSDPSLL MDFLLMLKKQ NPPFFRLIQD NKADFLRLLL EQPQEPNNGG DSGNQVGESE ETKVEELQAD KTNNPNNEGD GGNQVGESKD
301: TEVEVATPED YELIERLEAL GFERGDAAVA YFACNRNVQV AANHLLGYKH ESRRE

Best Arabidopsis Sequence Match ( AT1G79650.1 )
(BLAST)

001: MKLTVKTLKG SHFEIRVLPS DTIMAVKKNI EDSQGKDNYP CGQQLLIHNG KVLKDETSLV ENKVTEEGFL VVMLSKSKSG GSAGQASVQT SSVSQPVSAT
101: TSSTKPAAPS TTQSSPVPAS PIPAQEQPAA QTDTYGQAAS TLVSGSSLEQ MVQQIMEMGG GSWDKETVTR ALRAAYNNPE RAVDYLYSGI PQTAEVAVPV
201: PEAQIAGSGA APVAPASGGP NSSPLDLFPQ ETVAAAGSGD LGTLEFLRNN DQFQQLRTMV HSNPQILQPM LQELGKQNPQ LLRLIQENQA EFLQLVNEPY
301: EGSDGEGDMF DQPEQEMPHA INVTPAEQEA IQRLEAMGFD RALVIEAFLA CDRNEELAAN YLLENSGDFE D

Arabidopsis Description

RAD23Rad23 UV excision repair protein family [Source:UniProtKB/TrEMBL;Acc:F4IF85]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.