CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72742
CDX90286
CDY12093
CDY22415

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38470.1	CDX72742	AT4G38630.1	20059542
AT5G38470.1	CDX90286	AT4G38630.1	20059542
AT5G38470.1	CDY12093	AT4G38630.1	20059542
AT5G38470.1	CDY22415	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74522	Canola	cytosol	98.15	97.63
Bra028184.1-P	Field mustard	cytosol	96.3	96.3
CDY58121	Canola	cytosol	90.74	89.32
CDX67404	Canola	cytosol	89.42	88.48
AT5G38470.1	Thale cress	cytosol	87.04	87.04
PGSC0003DMT400062159	Potato	cytosol	72.49	70.98
PGSC0003DMT400032941	Potato	cytosol	72.49	70.26
Solyc02g063130.2.1	Tomato	cytosol, extracellular	70.9	69.97
GSMUA_Achr9P15580_001	Banana	cytosol	40.48	69.23
CDX74251	Canola	cytosol	72.22	68.08
Solyc02g085840.2.1	Tomato	cytosol	69.84	67.87
CDX91998	Canola	cytosol	70.37	66.0
GSMUA_Achr5P05860_001	Banana	cytosol	67.46	65.05
GSMUA_Achr3P07380_001	Banana	cytosol	66.93	61.86
Os02t0465000-00	Rice	cytosol	14.81	60.87
Os06t0264300-01	Rice	cytosol, nucleus, plastid	64.29	58.84
KXG35597	Sorghum	cytosol	61.64	58.54
TraesCS5A01G204200.1	Wheat	cytosol	60.58	57.97
TraesCS5B01G204000.1	Wheat	cytosol	60.58	57.97
TraesCS7D01G209100.1	Wheat	cytosol	61.9	57.49
TraesCS5D01G211900.1	Wheat	cytosol	60.05	57.47
Os09t0407200-01	Rice	cytosol	59.26	57.14
TraesCS7B01G113500.1	Wheat	cytosol	61.38	57.0
TraesCS7A01G206300.1	Wheat	cytosol	61.38	56.86
KXG19738	Sorghum	cytosol	61.38	56.86
Zm00001d045665_P003	Maize	cytosol	61.64	56.83
Zm00001d037326_P001	Maize	cytosol	60.32	56.72
Os08t0430200-01	Rice	cytosol	60.58	56.4
HORVU5Hr1G060920.1	Barley	mitochondrion	62.96	54.97
GSMUA_Achr9P15590_001	Banana	cytosol	20.63	54.93
CDY52848	Canola	cytosol	50.0	52.65
CDY33351	Canola	cytosol, nucleus, plastid	49.74	52.22
CDX81753	Canola	cytosol, nucleus, plastid	50.0	52.07
CDY35071	Canola	cytosol	48.94	50.14
HORVU7Hr1G042100.8	Barley	cytosol	54.5	49.05
Zm00001d005732_P001	Maize	cytosol	57.41	48.76
CDX79333	Canola	cytosol	48.68	47.42
CDX67983	Canola	plastid	48.94	43.22
Zm00001d020419_P003	Maize	cytosol	50.53	41.79
CDY26493	Canola	cytosol	36.24	38.59
CDY26494	Canola	nucleus	27.25	38.29
CDX69474	Canola	cytosol	36.77	38.08
CDX69472	Canola	cytosol	34.13	36.34
CDY26496	Canola	cytosol	34.13	35.93
CDY26495	Canola	cytosol	13.76	27.37
CDX69473	Canola	cytosol	34.92	20.03

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	GO:A0A078EKJ1	EnsemblPlants:CDY01661
ProteinID:CDY01661	ProteinID:CDY01661.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006289	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0043161	EnsemblPlantsGene:GSBRNA2T00112732001	InterPro:IPR000626
InterPro:IPR015940	InterPro:IPR036353	PFAM:PF00240	PFAM:PF00627	PFAM:PF09280	PRINTS:PR01839
PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10621	PANTHER:PTHR10621:SF7	InterPro:Rad23	SMART:SM00165
SMART:SM00213	SMART:SM00727	SUPFAM:SSF101238	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd
TIGRFAMs:TIGR00601	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0004EBF91D	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
InterPro:XPC-bd	InterPro:XPC-bd_sf	SEG:seg	:	:	:

Description

BnaC04g30910D

Coordinates

chrLK031928:-:207520..210364

Molecular Weight (calculated)

40288.5 Da

IEP (calculated)

4.268

GRAVY (calculated)

-0.253

Length

378 amino acids

Sequence
(BLAST)

001: MKIFVKTLKG TNFEIEVNPA DTISDTKRRI ETHQGAQYPA AQQMLIHQGK VLKDETTLEE NNVVENSFIV IMLSKAKVSS SGASTASAPA PAPQAQPAQT
101: VATPQVAAPT VSVPEPTSVA ATVAAPSAAA ASTQTDVYGQ AASNLVAGNT LESTVQQILD MGGGSWDRDT VVRALRAAFN NPERAVEYLY SGIPSQAEIP
201: PAPQAPATGG QAANPLAQEA APVSATGGPN ANPLDLFPQG MPAADAGAGA GNLDFLRNSQ QFQALRAMVQ ANPQILQPML QELGKQNPQL VRLIQEHQAD
301: FLRLINEPVE GEENAMEQLE AAMPQAVTVT PEEREAIERL EAMGFDRAMV LEVFFACNKN EELAANYLLD HMHEFEEQ

Best Arabidopsis Sequence Match ( AT5G38470.1 )
(BLAST)

001: MKIFVKTLSG SNFEIEVKPA DKVSDVKTAI ETVKGAEYPA AKQMLIHQGK VLKDETTLEE NNVVENSFIV IMLSKTKASP SGASTASAPA PSATQPQTVA
101: TPQVSAPTAS VPVPTSGTAT AAAPATAASV QTDVYGQAAS NLVAGTTLES TVQQILDMGG GSWDRDTVVR ALRAAFNNPE RAVEYLYSGI PAQAEIPPVA
201: QAPATGEQAA NPLAQPQQAA APAAATGGPN ANPLNLFPQG MPAADAGAGA GNLDFLRNSQ QFQALRAMVQ ANPQILQPML QELGKQNPQL VRLIQEHQAD
301: FLRLINEPVE GEENVMEQLE AAMPQAVTVT PEEREAIERL EGMGFDRAMV LEVFFACNKN EELAANYLLD HMHEFEDQ

Arabidopsis Description

RAD23DUbiquitin receptor RAD23d [Source:UniProtKB/Swiss-Prot;Acc:Q84L30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.