Factsheet for Os08t0430200-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0146700-02
Os03t0243300-01
Os06t0699900-01
Os09t0326800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02540.1	Os02t0146700-02	AT2G20580.1	21798944
AT3G02540.1	Os06t0699900-01	AT2G20580.1	21798944
AT3G02540.1	Os09t0326800-01	AT2G20580.1	21798944
AT3G02540.1	Os03t0243300-01	AT4G38630.1	20059542
AT5G38470.1	Os03t0243300-01	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0465000-00	Rice	cytosol	16.5	72.83
Os09t0407200-01	Rice	cytosol	64.78	67.09
GSMUA_Achr9P15580_001	Banana	cytosol	36.21	66.52
GSMUA_Achr5P05860_001	Banana	cytosol	59.85	61.99
Solyc02g063130.2.1	Tomato	cytosol, extracellular	58.13	61.62
KRH75377	Soybean	cytosol, nucleus	59.36	61.48
Bra028184.1-P	Field mustard	cytosol	56.9	61.11
CDY58121	Canola	cytosol	57.39	60.68
CDY01661	Canola	cytosol	56.4	60.58
CDX74522	Canola	cytosol	56.65	60.53
Solyc02g085840.2.1	Tomato	cytosol	57.88	60.41
PGSC0003DMT400032941	Potato	cytosol	57.64	60.0
Bra028408.1-P	Field mustard	cytosol	56.4	59.95
AT5G38470.1	Thale cress	cytosol	55.42	59.52
VIT_01s0011g03410.t01	Wine grape	cytosol	58.13	59.45
PGSC0003DMT400062159	Potato	cytosol	56.16	59.07
CDX67404	Canola	cytosol	55.42	58.9
KRG90804	Soybean	cytosol	58.13	58.71
VIT_14s0006g03040.t01	Wine grape	cytosol	54.93	58.53
KRH45279	Soybean	cytosol	57.64	58.35
KRH35965	Soybean	cytosol	58.13	57.84
GSMUA_Achr3P07380_001	Banana	cytosol	58.13	57.7
Solyc04g007120.2.1	Tomato	cytosol, plastid	57.39	56.97
Os06t0264300-01	Rice	cytosol, nucleus, plastid	57.39	56.42
CDX91998	Canola	cytosol	55.66	56.08
Bra001050.1-P	Field mustard	cytosol	55.17	55.86
CDX74251	Canola	cytosol	54.68	55.36
KRH01763	Soybean	cytosol	50.49	54.67
AT3G02540.1	Thale cress	cytosol	56.4	54.65
Os02t0179300-01	Rice	plasma membrane	43.35	47.7
AT5G16090.1	Thale cress	cytosol	19.95	47.37
CDY26493	Canola	cytosol	31.28	35.77
Bra008649.1-P	Field mustard	cytosol	29.56	34.88
CDX69474	Canola	cytosol	31.28	34.79
CDY26494	Canola	nucleus	22.66	34.2
CDY26496	Canola	cytosol	28.33	32.03
CDX69472	Canola	cytosol	26.85	30.7
Bra008647.1-P	Field mustard	cytosol	26.85	30.7
CDY26495	Canola	cytosol	11.58	24.74
Bra008648.1-P	Field mustard	cytosol	28.82	18.66
CDX69473	Canola	cytosol	28.33	17.45

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	EntrezGene:4345632	EMBL:AK064881
ProteinID:BAD01169.1	ProteinID:BAF23768.1	ProteinID:BAT05541.1	ProteinID:EAZ42817.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003684	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0043161
InterPro:IPR000626	InterPro:IPR015940	InterPro:IPR036353	EnsemblPlantsGene:Os08g0430200	EnsemblPlants:Os08t0430200-01	PFAM:PF00240
PFAM:PF00627	PFAM:PF09280	PRINTS:PR01839	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10621
PANTHER:PTHR10621:SF7	UniProt:Q6ZKC1	InterPro:Rad23	SMART:SM00165	SMART:SM00213	SMART:SM00727
SUPFAM:SSF101238	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd	TIGRFAMs:TIGR00601	InterPro:UBA
InterPro:UBA-like_sf	UniParc:UPI0000212F7E	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	InterPro:XPC-bd	InterPro:XPC-bd_sf
RefSeq:XP_015650876.1	SEG:seg	:	:	:	:

Description

Rad23UV excision repair protein Rad23 family protein. (Os08t0430200-01);Similar to DNA repair protein RAD23. (Os08t0430200-02)

Coordinates

chr8:+:20797021..20801654

Molecular Weight (calculated)

42989.6 Da

IEP (calculated)

4.081

GRAVY (calculated)

-0.247

Length

406 amino acids

Sequence
(BLAST)

001: MKVSIKTLKG SSFEIDVEPT SKVSDVKKLI EVTQGDNVYP ADQQMLIHQG NVLKNDTTLE ENKVVENNFI VIMLSKKGSS SAASSTAKEP TKQPSVDRAI
101: PTAPATQPPA PPAPVSEPVT APVPTATTAS APAAAVTAAS TEADNYGQAA SNLVAGSNLE GTVQSILEMG GGAWDRDTVM RALRAAYNNP ERAVEYLYTG
201: VPEQAEAPAA VQALPVPAAV QALPVPAAVQ PVDPSQAPQS AQLSIPSSGP NANPLDLFPQ VLPNASANAG GGNLDVLRNN SQFRGLLSLV QANPQILQPL
301: LQELGKQNPQ ILQLIQENQA EFLRLINEPA EGAEGNLLDQ FAAGMPQTVA VTPEENEAIQ RLEQMGFDRD LVLEVFFACN KDELLAANYL LDHMNEFDDD
401: APEPPQ

Best Arabidopsis Sequence Match ( AT5G38470.1 )
(BLAST)

001: MKIFVKTLSG SNFEIEVKPA DKVSDVKTAI ETVKGAEYPA AKQMLIHQGK VLKDETTLEE NNVVENSFIV IMLSKTKASP SGASTASAPA PSATQPQTVA
101: TPQVSAPTAS VPVPTSGTAT AAAPATAASV QTDVYGQAAS NLVAGTTLES TVQQILDMGG GSWDRDTVVR ALRAAFNNPE RAVEYLYSGI PAQAEIPPVA
201: QAPATGEQAA NPLAQPQQAA APAAATGGPN ANPLNLFPQG MPAADAGAGA GNLDFLRNSQ QFQALRAMVQ ANPQILQPML QELGKQNPQL VRLIQEHQAD
301: FLRLINEPVE GEENVMEQLE AAMPQAVTVT PEEREAIERL EGMGFDRAMV LEVFFACNKN EELAANYLLD HMHEFEDQ

Arabidopsis Description

RAD23DUbiquitin receptor RAD23d [Source:UniProtKB/Swiss-Prot;Acc:Q84L30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.