CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90804	Soybean	cytosol	93.63	95.02
KRH45279	Soybean	cytosol	79.17	80.55
KRH75377	Soybean	cytosol, nucleus	74.51	77.55
GSMUA_Achr9P15580_001	Banana	cytosol	38.97	71.95
VIT_01s0011g03410.t01	Wine grape	cytosol	67.89	69.77
Solyc04g007120.2.1	Tomato	cytosol, plastid	67.65	67.48
GSMUA_Achr5P05860_001	Banana	cytosol	64.46	67.09
Os02t0465000-00	Rice	cytosol	14.46	64.13
GSMUA_Achr3P07380_001	Banana	cytosol	63.48	63.33
TraesCS5A01G204200.1	Wheat	cytosol	58.09	60.0
KRH09619	Soybean	cytosol, nucleus, plasma membrane	30.39	59.62
KXG35597	Sorghum	cytosol	57.6	59.05
Os06t0264300-01	Rice	cytosol, nucleus, plastid	59.56	58.84
KRH01763	Soybean	cytosol	53.68	58.4
Os08t0430200-01	Rice	cytosol	57.84	58.13
TraesCS7D01G209100.1	Wheat	cytosol	57.84	57.99
TraesCS7B01G113500.1	Wheat	cytosol	57.6	57.74
Os09t0407200-01	Rice	cytosol	55.39	57.65
TraesCS5D01G211900.1	Wheat	cytosol	55.64	57.47
TraesCS5B01G204000.1	Wheat	cytosol	55.39	57.22
KXG19738	Sorghum	cytosol	57.11	57.11
TraesCS7A01G206300.1	Wheat	cytosol	57.11	57.11
Zm00001d037326_P001	Maize	cytosol	56.13	56.97
HORVU5Hr1G060920.1	Barley	mitochondrion	58.09	54.73
Zm00001d045665_P003	Maize	cytosol	54.9	54.63
GSMUA_Achr9P15590_001	Banana	cytosol	18.87	54.23
KRH47002	Soybean	cytosol, nucleus, plastid	47.79	53.72
KRH23694	Soybean	cytosol	47.06	52.32
KRH44654	Soybean	cytosol, nucleus, plastid	47.55	50.92
HORVU7Hr1G042100.8	Barley	cytosol	51.96	50.48
Zm00001d005732_P001	Maize	cytosol	54.66	50.11
Zm00001d020419_P003	Maize	cytosol	46.08	41.14

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	EntrezGene:100818012	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	EMBL:ACUP02006715
EnsemblPlantsGene:GLYMA_10G275100	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006289	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0019538	GO:GO:0043161	UniProt:I1LEX5	InterPro:IPR000626	InterPro:IPR015940
InterPro:IPR036353	EnsemblPlants:KRH35965	ProteinID:KRH35965	ProteinID:KRH35965.1	PFAM:PF00240	PFAM:PF00627
PFAM:PF09280	PRINTS:PR01839	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10621	PANTHER:PTHR10621:SF8
InterPro:Rad23	SMART:SM00165	SMART:SM00213	SMART:SM00727	SUPFAM:SSF101238	SUPFAM:SSF46934
SUPFAM:SSF54236	InterPro:STI1_HS-bd	TIGRFAMs:TIGR00601	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0001BA8A5A
InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	InterPro:XPC-bd	InterPro:XPC-bd_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:+:49799898..49804237

Molecular Weight (calculated)

42916.7 Da

IEP (calculated)

4.491

GRAVY (calculated)

-0.233

Length

408 amino acids

Sequence
(BLAST)

001: MKVFVKTLKG THFEIEVTPQ DTVSEVKKNI ETVQGADVYP AAQQMLIHQG KVLRDASTLE ENKVVENTFI VIMLSKSKSP SGEGSTTSTA PSTKAPQTST
101: VPASTPPASV VPQASAPAPA PAPAATGALP ASVTAPISSP SPAPAPTPAP ISSGTAVEGS DIYGQAASNL VAGSNLEGTI QQILDMGGGS WDRDTVVRAL
201: RAAYNNPERA VEYLYTGIPE QAEAPLVAQV PASAQPTNPP ADAPQTAQPA PVTSAGPNAN PLDLFPQGLP NVGSGAAGAG SLDFLRNSQQ FQALRAMVQA
301: NPQILQPMLQ ELGKQNPHLM RLIRDHQADF LRLINEPAEG AEGNILGQMA SAMPQAVTVT PEERQAIERL EAMGFDRAIV LEVYFACNKN EELAANYLLD
401: HMHEFEEQ

Best Arabidopsis Sequence Match ( AT3G02540.1 )
(BLAST)

001: MKIFVKTLKG THFEIEVKPE DSVVDVKKNI ESVQGADVYP AAKQMLIHQG KVLKDETTIE ENKVAENSFI VIMMNKSKPA SAAASSASAG TSQAKSIPPS
101: TSQPSISPQT PASVSAPVAP APTRPPPPAP TPTPAPVAAT ETVTTPIPEP VPATISSSTP APDSAPVGSQ GDVYGQAASN LAAGSNLEST IQQILDMGGG
201: TWDRETVVLA LRAAFNNPER AVEYLYTGIP EQAEVPPVAR PPASAGQPAN PPAQTQQPAA APASGPNANP LDLFPQGLPN VGGNPGAGTL DFLRNSQQFQ
301: ALRAMVQANP QVLQPMLQEL GKQNPNLMRL IQDHQADFLR LINEPVEGGG ESGNLLGQMA AGMPQPQAIQ VTHEEREAIE RLEAMGFERA LVLEVFFACN
401: KNEELAANYL LDHMHEFEE

Arabidopsis Description

RAD23CUbiquitin receptor RAD23c [Source:UniProtKB/Swiss-Prot;Acc:Q84L31]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.