Factsheet for VIT_01s0011g03410.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0006g03040.t01	Wine grape	cytosol	73.55	76.64
GSMUA_Achr9P15580_001	Banana	cytosol	41.31	74.21
KRH75377	Soybean	cytosol, nucleus	70.78	71.68
KRH45279	Soybean	cytosol	72.04	71.32
Solyc04g007120.2.1	Tomato	cytosol, plastid	72.8	70.66
KRG90804	Soybean	cytosol	70.53	69.65
KRH35965	Soybean	cytosol	69.77	67.89
GSMUA_Achr5P05860_001	Banana	cytosol	67.0	67.86
GSMUA_Achr3P07380_001	Banana	cytosol	67.76	65.77
Os06t0264300-01	Rice	cytosol, nucleus, plastid	63.48	61.02
Os02t0465000-00	Rice	cytosol	14.11	60.87
TraesCS7D01G209100.1	Wheat	cytosol	62.22	60.69
KXG19738	Sorghum	cytosol	62.22	60.54
TraesCS7B01G113500.1	Wheat	cytosol	61.96	60.44
KXG35597	Sorghum	cytosol	60.45	60.3
GSMUA_Achr9P15590_001	Banana	cytosol	21.41	59.86
TraesCS7A01G206300.1	Wheat	cytosol	60.96	59.31
Zm00001d037326_P001	Maize	cytosol	59.95	59.2
Os09t0407200-01	Rice	cytosol	57.93	58.67
Os08t0430200-01	Rice	cytosol	59.45	58.13
Zm00001d045665_P003	Maize	cytosol	59.45	57.56
TraesCS5B01G204000.1	Wheat	cytosol	57.18	57.47
TraesCS5A01G204200.1	Wheat	cytosol	56.93	57.22
TraesCS5D01G211900.1	Wheat	cytosol	56.68	56.96
HORVU5Hr1G060920.1	Barley	mitochondrion	56.42	51.73
HORVU7Hr1G042100.8	Barley	cytosol	53.9	50.95
VIT_09s0018g01400.t01	Wine grape	cytosol	52.64	50.85
Zm00001d005732_P001	Maize	cytosol	56.68	50.56
Zm00001d020419_P003	Maize	cytosol	48.36	42.01

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	EntrezGene:100245820	wikigene:100245820	MapMan:19.2.4.4.1	Gene3D:3.10.20.90
ProteinID:CBI27030	ProteinID:CBI27030.3	ncoils:Coil	UniProt:D7T959	EMBL:FN595752	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
GO:GO:0043161	InterPro:IPR000626	InterPro:IPR015940	InterPro:IPR036353	EntrezGene:LOC100245820	wikigene:LOC100245820
PFAM:PF00240	PFAM:PF00627	PFAM:PF09280	PRINTS:PR01839	PFscan:PS50030	PFscan:PS50053
PANTHER:PTHR10621	PANTHER:PTHR10621:SF8	InterPro:Rad23	SMART:SM00165	SMART:SM00213	SMART:SM00727
SUPFAM:SSF101238	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd	TIGR:TC64328	TIGRFAMs:TIGR00601
InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI00019828C9	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	ArrayExpress:VIT_01s0011g03410
EnsemblPlantsGene:VIT_01s0011g03410	EnsemblPlants:VIT_01s0011g03410.t01	unigene:Vvi.591	InterPro:XPC-bd	InterPro:XPC-bd_sf	RefSeq:XP_002282352
RefSeq:XP_002282352.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:-:3084191..3092672

Molecular Weight (calculated)

41949.6 Da

IEP (calculated)

4.435

GRAVY (calculated)

-0.225

Length

397 amino acids

Sequence
(BLAST)

001: MKIFVKTLKG THFEIQVKPE DTVADVKANI EAVQGSDVYP ASQQMLIHQG KVLKDGTTLD ENKVAENSFV VVMLSKNKNS SEGSTASTAP APAPAPAPTP
101: IVKAPSASAP PPTTTSTLTA PQAPVVALPP PATVPAPAPA ATPASTVTVV SETDAYGQAA SNLVAGNNFE EAIQQILDMG GGTWDRDTVV RALRAAYNNP
201: ERAVEYLYSG IPEQAEVPPV ARAPASGQAA NPPAQSQQPV PAPSSGPNAN PLDLFPQGIP NVGSNPAGAG TLDFLRNSQQ FQALRAMVQA NPQILQPMLQ
301: ELGKQNPQLM RLIQEHQADF LRLINEPVEG GEGNILGQLA AAMPQAVTVT PEEREAIARL EAMGFDRALV LEVFFACNKN EELAANYLLD HMHEFED

Best Arabidopsis Sequence Match ( AT3G02540.3 )
(BLAST)

001: MKIFVKTLKG THFEIEVKPE DSVVDVKKNI ESVQGADVYP AAKQMLIHQG KVLKDETTIE ENKVAENSFI VIMMNKSKPA SAAASSASAG TSQAKSIPPS
101: TSQPSISPQT PASVSAPVAP APTRPPPPAP TPTPAPVAAT ETVTTPIPEP VPATISSSTP APDSAPVGQG DVYGQAASNL AAGSNLESTI QQILDMGGGT
201: WDRETVVLAL RAAFNNPERA VEYLYTGIPE QAEVPPVARP PASAGQPANP PAQTQQPAAA PASGPNANPL DLFPQGLPNV GGNPGAGTLD FLRNSQQFQA
301: LRAMVQANPQ VLQPMLQELG KQNPNLMRLI QDHQADFLRL INEPVEGGGE SGNLLGQMAA GMPQPQAIQV THEEREAIER LEAMGFERAL VLEVFFACNK
401: NEELAANYLL DHMHEFEE

Arabidopsis Description

RAD23CUbiquitin receptor RAD23c [Source:UniProtKB/Swiss-Prot;Acc:Q84L31]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.