CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45279	Soybean	cytosol	85.71	83.79
KRG90804	Soybean	cytosol	78.32	76.37
KRH35965	Soybean	cytosol	77.55	74.51
GSMUA_Achr9P15580_001	Banana	cytosol	40.56	71.95
VIT_01s0011g03410.t01	Wine grape	cytosol	71.68	70.78
Solyc04g007120.2.1	Tomato	cytosol, plastid	71.17	68.22
GSMUA_Achr5P05860_001	Banana	cytosol	67.86	67.86
Os02t0465000-00	Rice	cytosol	15.56	66.3
GSMUA_Achr3P07380_001	Banana	cytosol	67.35	64.55
KRH09619	Soybean	cytosol, nucleus, plasma membrane	33.16	62.5
TraesCS7D01G209100.1	Wheat	cytosol	61.99	59.71
TraesCS7B01G113500.1	Wheat	cytosol	61.99	59.71
KXG19738	Sorghum	cytosol	61.99	59.56
TraesCS5D01G211900.1	Wheat	cytosol	59.95	59.49
Os08t0430200-01	Rice	cytosol	61.48	59.36
Zm00001d037326_P001	Maize	cytosol	60.71	59.2
Os06t0264300-01	Rice	cytosol, nucleus, plastid	62.24	59.08
TraesCS5B01G204000.1	Wheat	cytosol	59.44	58.99
KRH01763	Soybean	cytosol	56.38	58.93
Zm00001d045665_P003	Maize	cytosol	61.48	58.78
KXG35597	Sorghum	cytosol	59.44	58.54
TraesCS5A01G204200.1	Wheat	cytosol	57.4	56.96
Os09t0407200-01	Rice	cytosol	56.89	56.89
TraesCS7A01G206300.1	Wheat	cytosol	59.18	56.86
GSMUA_Achr9P15590_001	Banana	cytosol	20.15	55.63
KRH47002	Soybean	cytosol, nucleus, plastid	50.26	54.27
HORVU5Hr1G060920.1	Barley	mitochondrion	58.42	52.89
KRH44654	Soybean	cytosol, nucleus, plastid	51.28	52.76
KRH23694	Soybean	cytosol	48.72	52.04
HORVU7Hr1G042100.8	Barley	cytosol	55.36	51.67
Zm00001d005732_P001	Maize	cytosol	57.91	51.01
Zm00001d020419_P003	Maize	cytosol	50.26	43.11

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	EntrezGene:100809066	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	EMBL:ACUP02000340
EMBL:BT097523	UniProt:C6TIN6	EnsemblPlantsGene:GLYMA_01G081500	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003684	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0043161	InterPro:IPR000626
InterPro:IPR015940	InterPro:IPR036353	EnsemblPlants:KRH75377	ProteinID:KRH75377	ProteinID:KRH75377.1	PFAM:PF00240
PFAM:PF00627	PFAM:PF09280	PRINTS:PR01839	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10621
PANTHER:PTHR10621:SF7	InterPro:Rad23	SMART:SM00165	SMART:SM00213	SMART:SM00727	SUPFAM:SSF101238
SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd	TIGRFAMs:TIGR00601	InterPro:UBA	InterPro:UBA-like_sf
UniParc:UPI0001B16CCF	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	InterPro:XPC-bd	InterPro:XPC-bd_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:23600207..23609665

Molecular Weight (calculated)

41198.4 Da

IEP (calculated)

4.496

GRAVY (calculated)

-0.259

Length

392 amino acids

Sequence
(BLAST)

001: MKVFVKTLKG THFEIEVNPS DTLSEVKKNI ETVQGADVYP AAQQMLIHQG KVLKDGTTLE ENKVAENSFI VIMLSKTKSS SGEGSTTSTA PSVKASATPT
101: STSVSAAPQA PASTGATPTP VTAPAAPASA AAPAPISSGS AVPESDIYGQ AASNLVAGSN LEGTIQQILD MGGGSWDRDT VVRALRAAYN NPERAVEYLY
201: SGIPEQAEAP PVTREPASAQ PANPPAAAPQ AAQPASVPSS GPNANPLDLF PQGLPNVGSG AAGAGSLDFL RNSQQFQALR AMVQANPQIL QPMLQELGKQ
301: NPHLMRLIQE HQVDFLRLIN EPVEGGEGNI LGQLASAMPQ AVTVTPEERQ AIERLEAMGF DRATVLEVYF ACNKNEELAA NYLLDHMHEF DE

Best Arabidopsis Sequence Match ( AT1G79650.1 )
(BLAST)

001: MKLTVKTLKG SHFEIRVLPS DTIMAVKKNI EDSQGKDNYP CGQQLLIHNG KVLKDETSLV ENKVTEEGFL VVMLSKSKSG GSAGQASVQT SSVSQPVSAT
101: TSSTKPAAPS TTQSSPVPAS PIPAQEQPAA QTDTYGQAAS TLVSGSSLEQ MVQQIMEMGG GSWDKETVTR ALRAAYNNPE RAVDYLYSGI PQTAEVAVPV
201: PEAQIAGSGA APVAPASGGP NSSPLDLFPQ ETVAAAGSGD LGTLEFLRNN DQFQQLRTMV HSNPQILQPM LQELGKQNPQ LLRLIQENQA EFLQLVNEPY
301: EGSDGEGDMF DQPEQEMPHA INVTPAEQEA IQRLEAMGFD RALVIEAFLA CDRNEELAAN YLLENSGDFE D

Arabidopsis Description

RAD23Rad23 UV excision repair protein family [Source:UniProtKB/TrEMBL;Acc:F4IF85]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.