CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH08049
KRH28809
KRH69766
KRH76642

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16190.1	KRH08049	AT4G38630.1	20059542
AT1G16190.1	KRH28809	AT4G38630.1	20059542
AT1G16190.1	KRH69766	AT4G38630.1	20059542
AT1G16190.1	KRH76642	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G029720.1	Barley	cytosol, mitochondrion, nucleus	12.26	83.33
KRH09619	Soybean	cytosol, nucleus, plasma membrane	46.32	81.73
KRH47002	Soybean	cytosol, nucleus, plastid	74.11	74.93
KRH44654	Soybean	cytosol, nucleus, plastid	74.66	71.92
Solyc03g117780.2.1	Tomato	cytosol	67.85	68.03
PGSC0003DMT400036871	Potato	cytosol	67.57	67.57
Bra026728.1-P	Field mustard	cytosol	65.4	66.85
CDY52848	Canola	cytosol	65.4	66.85
CDX81753	Canola	cytosol, nucleus, plastid	64.58	65.29
AT1G16190.1	Thale cress	cytosol	65.4	65.22
VIT_09s0018g01400.t01	Wine grape	cytosol	72.75	64.96
CDY33351	Canola	cytosol, nucleus, plastid	62.67	63.89
AT1G79650.4	Thale cress	cytosol	68.39	63.54
Zm00001d053738_P001	Maize	cytosol	61.85	61.68
CDX79333	Canola	cytosol	65.12	61.6
EES04633	Sorghum	cytosol	61.85	61.52
Os02t0179300-01	Rice	plasma membrane	61.85	61.52
GSMUA_Achr7P05130_001	Banana	endoplasmic reticulum	29.16	61.49
TraesCS6D01G138800.2	Wheat	cytosol	61.31	61.31
TraesCS6B01G177400.1	Wheat	cytosol	61.04	61.04
TraesCS6A01G149500.1	Wheat	cytosol	61.04	61.04
GSMUA_Achr1P25580_001	Banana	cytosol	63.49	60.68
GSMUA_Achr4P20500_001	Banana	cytosol	63.76	60.15
CDY35071	Canola	cytosol	59.95	59.62
Bra026076.1-P	Field mustard	cytosol	59.95	59.62
HORVU6Hr1G029760.4	Barley	cytosol	52.86	56.73
GSMUA_Achr7P05120_001	Banana	cytosol	41.69	56.04
CDX67983	Canola	plastid	65.12	55.84
Bra003599.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	64.31	54.88
KRH75377	Soybean	cytosol, nucleus	52.04	48.72
KRH35965	Soybean	cytosol	52.32	47.06
KRG90804	Soybean	cytosol	51.5	47.01
KRH45279	Soybean	cytosol	51.23	46.88
KRH01763	Soybean	cytosol	43.32	42.4

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	EntrezGene:100804038	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	EMBL:ACUP02008482
EnsemblPlantsGene:GLYMA_13G371600	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006289	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0019538	GO:GO:0043161	UniProt:I1M603	InterPro:IPR000626	InterPro:IPR015940
InterPro:IPR036353	EnsemblPlants:KRH23694	ProteinID:KRH23694	ProteinID:KRH23694.1	PFAM:PF00240	PFAM:PF00627
PFAM:PF09280	PRINTS:PR01839	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10621	PANTHER:PTHR10621:SF26
InterPro:Rad23	SMART:SM00165	SMART:SM00213	SMART:SM00727	SUPFAM:SSF101238	SUPFAM:SSF46934
SUPFAM:SSF54236	InterPro:STI1_HS-bd	TIGRFAMs:TIGR00601	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI000233B81F
InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	InterPro:XPC-bd	InterPro:XPC-bd_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr13:-:45672712..45677309

Molecular Weight (calculated)

39176.9 Da

IEP (calculated)

4.206

GRAVY (calculated)

-0.291

Length

367 amino acids

Sequence
(BLAST)

001: MKLTVKTLKG SHFEIRVQPS DTIMAVKKNI EDVQGKDNYP CGQQLLIHNG KVLKDETTLS DNKVSEDGFL VVMLSKGKTL GSAGISSTQF ASNPPTTVST
101: PNSTPLVQPQ SANNNASATD VTTTNVTTNT YGQAASNLVA GSNLEQTIQQ LMDMGGGSWD RDTVTCALRA AYNNPERAVD YLYSGIPVAA EIAVPAASYP
201: ISQTTETGGA SVGAVPGVPN SSPLNMFPQE TISGAGAEIG SLDFLRNNPQ FQALRSMVQS NPQILQPVLQ ELGKQNPSLL TLIQEHHAEF LQLINEPVEG
301: SEGDIFDQPE QDMPHAINVT PAEQEAIGRL EAMGFDRASV IEAFLACDHD EQLAANYLLE NAGDFEG

Best Arabidopsis Sequence Match ( AT1G79650.1 )
(BLAST)

001: MKLTVKTLKG SHFEIRVLPS DTIMAVKKNI EDSQGKDNYP CGQQLLIHNG KVLKDETSLV ENKVTEEGFL VVMLSKSKSG GSAGQASVQT SSVSQPVSAT
101: TSSTKPAAPS TTQSSPVPAS PIPAQEQPAA QTDTYGQAAS TLVSGSSLEQ MVQQIMEMGG GSWDKETVTR ALRAAYNNPE RAVDYLYSGI PQTAEVAVPV
201: PEAQIAGSGA APVAPASGGP NSSPLDLFPQ ETVAAAGSGD LGTLEFLRNN DQFQQLRTMV HSNPQILQPM LQELGKQNPQ LLRLIQENQA EFLQLVNEPY
301: EGSDGEGDMF DQPEQEMPHA INVTPAEQEA IQRLEAMGFD RALVIEAFLA CDRNEELAAN YLLENSGDFE D

Arabidopsis Description

RAD23Rad23 UV excision repair protein family [Source:UniProtKB/TrEMBL;Acc:F4IF85]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.