Factsheet for Solyc03g117780.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g083710.2.1
Solyc03g033430.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16190.1	Solyc02g083710.2.1	AT4G38630.1	20059542
AT1G16190.1	Solyc03g033430.1.1	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036871	Potato	cytosol	90.44	90.19
HORVU6Hr1G029720.1	Barley	cytosol, mitochondrion, nucleus	12.3	83.33
KRH47002	Soybean	cytosol, nucleus, plastid	68.31	68.87
KRH09619	Soybean	cytosol, nucleus, plasma membrane	39.07	68.75
KRH23694	Soybean	cytosol	68.03	67.85
CDX81753	Canola	cytosol, nucleus, plastid	67.21	67.77
Bra026728.1-P	Field mustard	cytosol	65.85	67.13
CDY52848	Canola	cytosol	65.85	67.13
AT1G16190.1	Thale cress	cytosol	66.67	66.3
KRH44654	Soybean	cytosol, nucleus, plastid	68.31	65.62
CDY33351	Canola	cytosol, nucleus, plastid	64.21	65.28
VIT_09s0018g01400.t01	Wine grape	cytosol	71.86	63.99
AT1G79650.4	Thale cress	cytosol	68.58	63.54
TraesCS6B01G177400.1	Wheat	cytosol	63.39	63.22
GSMUA_Achr4P20500_001	Banana	cytosol	66.94	62.98
TraesCS6A01G149500.1	Wheat	cytosol	63.11	62.94
Zm00001d053738_P001	Maize	cytosol	63.11	62.77
TraesCS6D01G138800.2	Wheat	cytosol	62.84	62.67
Os02t0179300-01	Rice	plasma membrane	63.11	62.6
CDY35071	Canola	cytosol	62.84	62.33
Bra026076.1-P	Field mustard	cytosol	62.84	62.33
EES04633	Sorghum	cytosol	62.57	62.06
CDX79333	Canola	cytosol	65.3	61.6
GSMUA_Achr7P05130_001	Banana	endoplasmic reticulum	28.69	60.34
GSMUA_Achr1P25580_001	Banana	cytosol	63.11	60.16
HORVU6Hr1G029760.4	Barley	cytosol	56.01	59.94
CDX67983	Canola	plastid	65.3	55.84
Bra003599.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	65.03	55.35
GSMUA_Achr7P05120_001	Banana	cytosol	40.98	54.95
Solyc02g085840.2.1	Tomato	cytosol	53.28	50.13
Solyc04g007120.2.1	Tomato	cytosol, plastid	54.37	48.66
Solyc02g063130.2.1	Tomato	cytosol, extracellular	50.82	48.56

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003684	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0043161
InterPro:IPR000626	InterPro:IPR015940	InterPro:IPR036353	UniProt:K4BLS9	PFAM:PF00240	PFAM:PF00627
PFAM:PF09280	PRINTS:PR01839	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10621	PANTHER:PTHR10621:SF26
InterPro:Rad23	SMART:SM00165	SMART:SM00213	SMART:SM00727	SUPFAM:SSF101238	SUPFAM:SSF46934
SUPFAM:SSF54236	InterPro:STI1_HS-bd	EnsemblPlantsGene:Solyc03g117780.2	EnsemblPlants:Solyc03g117780.2.1	TIGRFAMs:TIGR00601	InterPro:UBA
InterPro:UBA-like_sf	UniParc:UPI0002767881	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	InterPro:XPC-bd	InterPro:XPC-bd_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:66806776..66811545

Molecular Weight (calculated)

39185.8 Da

IEP (calculated)

4.161

GRAVY (calculated)

-0.365

Length

366 amino acids

Sequence
(BLAST)

001: MKLTVKTLKG SHFEIRVQPS DTIMAVKKNI EDVQGKDNYP CGQQLLIHNG KVLKDESTLL ENNVSEDGFL VVMLSKSKTA SSSGTTSAQQ PATAANPTTT
101: PEVIPPSQAP KDVVSASDAA AASLPADDYS QAASNLVAGN NLEQTIQQLM DMGGGSWDKE TVTRALRAAY NNPERAVDYL YSGIPETAEV SVPVARGGVN
201: SAAVPTAAPI APSSGAPNSA PLNLFPQENV AGGGGAGLGS LDFLRNNQQF QALRSMVQAN PQILQPMLQE LGKQNPQLLR SIQEHDQEFL QLINEPVDGS
301: DGDMFDQAEQ EIPHTVSVTP EEQEVIERLE AMGFDRALVI EAFLACDRNE ELAANYLLEH AGDYED

Best Arabidopsis Sequence Match ( AT1G79650.1 )
(BLAST)

001: MKLTVKTLKG SHFEIRVLPS DTIMAVKKNI EDSQGKDNYP CGQQLLIHNG KVLKDETSLV ENKVTEEGFL VVMLSKSKSG GSAGQASVQT SSVSQPVSAT
101: TSSTKPAAPS TTQSSPVPAS PIPAQEQPAA QTDTYGQAAS TLVSGSSLEQ MVQQIMEMGG GSWDKETVTR ALRAAYNNPE RAVDYLYSGI PQTAEVAVPV
201: PEAQIAGSGA APVAPASGGP NSSPLDLFPQ ETVAAAGSGD LGTLEFLRNN DQFQQLRTMV HSNPQILQPM LQELGKQNPQ LLRLIQENQA EFLQLVNEPY
301: EGSDGEGDMF DQPEQEMPHA INVTPAEQEA IQRLEAMGFD RALVIEAFLA CDRNEELAAN YLLENSGDFE D

Arabidopsis Description

RAD23Rad23 UV excision repair protein family [Source:UniProtKB/TrEMBL;Acc:F4IF85]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.