Factsheet for GSMUA_Achr1P25580_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr2P11290_001
GSMUA_Achr4P25580_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16190.1	GSMUA_Achr11P...	AT4G38630.1	20059542
AT1G16190.1	GSMUA_Achr2P11290_001	AT4G38630.1	20059542
AT1G16190.1	GSMUA_Achr4P25580_001	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G029720.1	Barley	cytosol, mitochondrion, nucleus	10.68	75.93
GSMUA_Achr4P20500_001	Banana	cytosol	73.96	73.01
GSMUA_Achr7P05130_001	Banana	endoplasmic reticulum	31.25	68.97
GSMUA_Achr7P05120_001	Banana	cytosol	47.4	66.67
Os02t0179300-01	Rice	plasma membrane	63.02	65.58
KRH47002	Soybean	cytosol, nucleus, plastid	61.46	65.01
EES04633	Sorghum	cytosol	61.98	64.5
Zm00001d053738_P001	Maize	cytosol	61.46	64.13
TraesCS6B01G177400.1	Wheat	cytosol	61.2	64.03
TraesCS6D01G138800.2	Wheat	cytosol	60.68	63.49
TraesCS6A01G149500.1	Wheat	cytosol	60.68	63.49
KRH23694	Soybean	cytosol	60.68	63.49
PGSC0003DMT400036871	Potato	cytosol	60.42	63.22
Solyc03g117780.2.1	Tomato	cytosol	60.16	63.11
KRH44654	Soybean	cytosol, nucleus, plastid	62.5	62.99
KRH09619	Soybean	cytosol, nucleus, plasma membrane	34.11	62.98
CDY52848	Canola	cytosol	57.55	61.56
Bra026728.1-P	Field mustard	cytosol	57.55	61.56
CDX81753	Canola	cytosol, nucleus, plastid	56.51	59.78
HORVU6Hr1G029760.4	Barley	cytosol	52.86	59.36
AT1G16190.1	Thale cress	cytosol	56.77	59.24
CDY33351	Canola	cytosol, nucleus, plastid	54.43	58.06
VIT_09s0018g01400.t01	Wine grape	cytosol	61.98	57.91
AT1G79650.4	Thale cress	cytosol	58.85	57.22
CDX79333	Canola	cytosol	57.55	56.96
Bra026076.1-P	Field mustard	cytosol	54.17	56.37
CDY35071	Canola	cytosol	53.65	55.83
GSMUA_Achr9P15580_001	Banana	cytosol	30.73	53.39
CDX67983	Canola	plastid	57.55	51.64
Bra003599.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	57.55	51.4
GSMUA_Achr3P07380_001	Banana	cytosol	48.96	45.97
GSMUA_Achr5P05860_001	Banana	cytosol	46.88	45.92
GSMUA_Achr9P15590_001	Banana	cytosol	15.1	40.85

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
GO:GO:0043161	EnsemblPlantsGene:GSMUA_Achr1G25580_001	EnsemblPlants:GSMUA_Achr1P25580_001	EnsemblPlants:GSMUA_Achr1T25580_001	InterPro:IPR000626	InterPro:IPR015940
InterPro:IPR036353	UniProt:M0S315	PFAM:PF00240	PFAM:PF00627	PFAM:PF09280	PRINTS:PR01839
PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10621	PANTHER:PTHR10621:SF26	InterPro:Rad23	SMART:SM00165
SMART:SM00213	SMART:SM00727	SUPFAM:SSF101238	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd
TIGRFAMs:TIGR00601	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI000296D711	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
InterPro:XPC-bd	InterPro:XPC-bd_sf	SEG:seg	:	:	:

Description

Putative DNA repair protein RAD23-1 [Source:GMGC_GENE;Acc:GSMUA_Achr1G25580_001]

Coordinates

chr1:+:19891428..19902135

Molecular Weight (calculated)

41134.2 Da

IEP (calculated)

4.212

GRAVY (calculated)

-0.405

Length

384 amino acids

Sequence
(BLAST)

001: MKLTVKTLKG TQFEIQVQPN DTIMAVKKNI EHVQGKDNYP WGQQLLIHNG KVLKDETTLE DNKVNENGFL VVMLSKSKAA GVGGASSAQP SATSTVQHPA
101: AEQTPPSVPP QAPPQTQALE SSATGPGGPQ GPNAQVSADA YGQAASSSIE ESKLEQMVSQ LMEMGGGNWD RETVLLALRA ACNNPERAVE YLYSGIPATA
201: EIAVPASPFS SSQASPQGAS APDVAASGPL FGVPNSSPLD MFPQGNTDLG VGAGGGYLDF LRNNQQFLAL RAMVQANPQI LQPMLQELSK QNPQLLRLIQ
301: EHHAEFLQLI NEPVDEGLEG DLFDQPEEDE MQHTVNVTAE EQEAIGRLEA MGFDRARVLE AFLACDRNEQ LAANYLLEHA GDED

Best Arabidopsis Sequence Match ( AT1G79650.2 )
(BLAST)

001: MKLTVKTLKG SHFEIRVLPS DTIMAVKKNI EDSQGKDNYP CGQQLLIHNG KVLKDETSLV ENKVTEEGFL VVMLSKSKSG GSAGQASVQP VSATTSSTKP
101: AAPSTTQSSP VPASPIPAQE QPAAQTDTYG QAASTLVSGS SLEQMVQQIM EMGGGSWDKE TVTRALRAAY NNPERAVDYL YSGIPQTAEV AVPVPEAQIA
201: GSGAAPVAPA SGGPNSSPLD LFPQETVAAA GSGDLGTLEF LRNNDQFQQL RTMVHSNPQI LQPMLQELGK QNPQLLRLIQ ENQAEFLQLV NEPYEGSDGE
301: GDMFDQPEQE MPHAINVTPA EQEAIQRLEA MGFDRALVIE AFLACDRNEE LAANYLLENS GDFED

Arabidopsis Description

RAD23Rad23 UV excision repair protein family [Source:UniProtKB/TrEMBL;Acc:F4IF85]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.