Factsheet for GSMUA_Achr9P15580_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P10580_001
GSMUA_Achr2P11290_001
GSMUA_Achr4P25580_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02540.1	GSMUA_Achr11P...	AT2G20580.1	21798944
AT3G02540.1	GSMUA_Achr1P10580_001	AT2G20580.1	21798944
AT3G02540.1	GSMUA_Achr11P...	AT4G38630.1	20059542
AT3G02540.1	GSMUA_Achr2P11290_001	AT4G38630.1	20059542
AT3G02540.1	GSMUA_Achr4P25580_001	AT4G38630.1	20059542
AT5G38470.1	GSMUA_Achr11P...	AT4G38630.1	20059542
AT5G38470.1	GSMUA_Achr2P11290_001	AT4G38630.1	20059542
AT5G38470.1	GSMUA_Achr4P25580_001	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P05860_001	Banana	cytosol	88.24	49.74
GSMUA_Achr3P07380_001	Banana	cytosol	85.52	46.21
GSMUA_Achr7P05130_001	Banana	endoplasmic reticulum	34.84	44.25
VIT_14s0006g03040.t01	Wine grape	cytosol	73.76	42.78
PGSC0003DMT400062159	Potato	cytosol	74.21	42.49
VIT_01s0011g03410.t01	Wine grape	cytosol	74.21	41.31
PGSC0003DMT400032941	Potato	cytosol	72.4	41.03
AT5G38470.1	Thale cress	cytosol	70.14	41.01
Solyc02g063130.2.1	Tomato	cytosol, extracellular	71.04	40.99
KRH75377	Soybean	cytosol, nucleus	71.95	40.56
Bra028184.1-P	Field mustard	cytosol	69.23	40.48
CDY01661	Canola	cytosol	69.23	40.48
Solyc02g085840.2.1	Tomato	cytosol	71.04	40.36
CDX74522	Canola	cytosol	69.23	40.26
Os02t0465000-00	Rice	cytosol	16.74	40.22
Bra028408.1-P	Field mustard	cytosol	69.23	40.05
CDX91998	Canola	cytosol	72.85	39.95
CDY58121	Canola	cytosol	69.23	39.84
CDX67404	Canola	cytosol	68.78	39.79
KRH45279	Soybean	cytosol	71.95	39.65
KRG90804	Soybean	cytosol	71.95	39.55
Bra001050.1-P	Field mustard	cytosol	71.04	39.15
KRH35965	Soybean	cytosol	71.95	38.97
CDX74251	Canola	cytosol	70.59	38.9
Solyc04g007120.2.1	Tomato	cytosol, plastid	69.68	37.65
TraesCS7B01G113500.1	Wheat	cytosol	69.23	37.59
Os06t0264300-01	Rice	cytosol, nucleus, plastid	70.14	37.53
TraesCS7A01G206300.1	Wheat	cytosol	69.23	37.5
AT3G02540.1	Thale cress	cytosol	70.59	37.23
TraesCS7D01G209100.1	Wheat	cytosol	68.33	37.1
Zm00001d045665_P003	Maize	cytosol	68.33	36.83
KXG19738	Sorghum	cytosol	67.87	36.76
TraesCS5B01G204000.1	Wheat	cytosol	65.16	36.46
Os08t0430200-01	Rice	cytosol	66.52	36.21
TraesCS5D01G211900.1	Wheat	cytosol	64.71	36.2
Zm00001d037326_P001	Maize	cytosol	65.16	35.82
KXG35597	Sorghum	cytosol	64.25	35.68
TraesCS5A01G204200.1	Wheat	cytosol	62.9	35.19
Os09t0407200-01	Rice	cytosol	61.99	34.95
KRH01763	Soybean	cytosol	56.56	33.33
HORVU5Hr1G060920.1	Barley	mitochondrion	65.16	33.26
GSMUA_Achr4P20500_001	Banana	cytosol	55.2	31.36
GSMUA_Achr1P25580_001	Banana	cytosol	53.39	30.73
HORVU7Hr1G042100.8	Barley	cytosol	57.01	30.0
Zm00001d005732_P001	Maize	cytosol	60.18	29.89
AT5G16090.1	Thale cress	cytosol	20.36	26.32
Zm00001d020419_P003	Maize	cytosol	50.23	24.29
CDY26493	Canola	cytosol	35.29	21.97
CDX69474	Canola	cytosol	33.94	20.55
Bra008649.1-P	Field mustard	cytosol	31.22	20.06
CDY26496	Canola	cytosol	32.58	20.06
CDX69472	Canola	cytosol	28.51	17.75
Bra008647.1-P	Field mustard	cytosol	28.51	17.75
GSMUA_Achr7P05120_001	Banana	cytosol	21.72	17.58
CDY26494	Canola	nucleus	19.46	15.99
CDY26495	Canola	cytosol	11.76	13.68
Bra008648.1-P	Field mustard	cytosol	30.32	10.69
CDX69473	Canola	cytosol	28.96	9.71
GSMUA_Achr9P15590_001	Banana	cytosol	3.17	4.93

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	MapMan:19.2.4.4.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003684	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0043161	EnsemblPlantsGene:GSMUA_Achr9G15580_001
EnsemblPlants:GSMUA_Achr9P15580_001	EnsemblPlants:GSMUA_Achr9T15580_001	InterPro:IPR015940	InterPro:IPR036353	UniProt:M0U0L6	PFAM:PF00627
PFAM:PF09280	PRINTS:PR01839	PFscan:PS50030	PANTHER:PTHR10621	PANTHER:PTHR10621:SF7	InterPro:Rad23
SMART:SM00165	SMART:SM00727	SUPFAM:SSF101238	SUPFAM:SSF46934	InterPro:STI1_HS-bd	TIGRFAMs:TIGR00601
InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0002965B40	InterPro:XPC-bd	InterPro:XPC-bd_sf	SEG:seg

Description

Putative DNA repair protein RAD23-3 [Source:GMGC_GENE;Acc:GSMUA_Achr9G15580_001]

Coordinates

chr9:-:10293858..10297612

Molecular Weight (calculated)

23978.4 Da

IEP (calculated)

4.210

GRAVY (calculated)

-0.353

Length

221 amino acids

Sequence
(BLAST)

001: MGGGTWDRDT VVRALRAAYN NPERAIEYLY SGIPEHAAAP PVAQAPPSGQ TTDSPIQVPQ PVQPAVPMGG PNANPLDLFP QGLPDVGSNA GGGSLDFLQN
101: SPQFRALQAL VQANPQFLQP MLQELGKQNP QILRLIQEHQ GEFLRLINEP AEGTEGGNIL GQLPTGMPQA LSVTPEEHEA IERLEAMGFD RALVLQVFFA
201: CNKNEELAAN YLLDHMHEFE D

Best Arabidopsis Sequence Match ( AT3G02540.1 )
(BLAST)

001: MKIFVKTLKG THFEIEVKPE DSVVDVKKNI ESVQGADVYP AAKQMLIHQG KVLKDETTIE ENKVAENSFI VIMMNKSKPA SAAASSASAG TSQAKSIPPS
101: TSQPSISPQT PASVSAPVAP APTRPPPPAP TPTPAPVAAT ETVTTPIPEP VPATISSSTP APDSAPVGSQ GDVYGQAASN LAAGSNLEST IQQILDMGGG
201: TWDRETVVLA LRAAFNNPER AVEYLYTGIP EQAEVPPVAR PPASAGQPAN PPAQTQQPAA APASGPNANP LDLFPQGLPN VGGNPGAGTL DFLRNSQQFQ
301: ALRAMVQANP QVLQPMLQEL GKQNPNLMRL IQDHQADFLR LINEPVEGGG ESGNLLGQMA AGMPQPQAIQ VTHEEREAIE RLEAMGFERA LVLEVFFACN
401: KNEELAANYL LDHMHEFEE

Arabidopsis Description

RAD23CUbiquitin receptor RAD23c [Source:UniProtKB/Swiss-Prot;Acc:Q84L31]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.