Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26493 | Canola | cytosol | 57.25 | 43.38 |
| CDX69474 | Canola | cytosol | 53.53 | 39.45 |
| CDY26496 | Canola | cytosol | 50.19 | 37.6 |
| AT5G16090.1 | Thale cress | cytosol | 23.42 | 36.84 |
| GSMUA_Achr9P15590_001 | Banana | cytosol | 19.33 | 36.62 |
| CDX69472 | Canola | cytosol | 45.72 | 34.65 |
| CDY01661 | Canola | cytosol | 38.29 | 27.25 |
| CDX74522 | Canola | cytosol | 37.92 | 26.84 |
| CDY58121 | Canola | cytosol | 38.29 | 26.82 |
| CDX67404 | Canola | cytosol | 37.92 | 26.7 |
| CDY26495 | Canola | cytosol | 18.22 | 25.79 |
| CDX74251 | Canola | cytosol | 37.17 | 24.94 |
| CDX91998 | Canola | cytosol | 37.17 | 24.81 |
| TraesCS5D01G211900.1 | Wheat | cytosol | 36.06 | 24.56 |
| CDY33351 | Canola | cytosol, nucleus, plastid | 32.71 | 24.44 |
| TraesCS5B01G204000.1 | Wheat | cytosol | 35.69 | 24.3 |
| GSMUA_Achr5P05860_001 | Banana | cytosol | 35.32 | 24.23 |
| TraesCS5A01G204200.1 | Wheat | cytosol | 35.32 | 24.05 |
| CDY52848 | Canola | cytosol | 31.6 | 23.68 |
| CDY35071 | Canola | cytosol | 32.34 | 23.58 |
| KXG35597 | Sorghum | cytosol | 34.57 | 23.37 |
| Zm00001d045665_P003 | Maize | cytosol | 35.32 | 23.17 |
| CDX81753 | Canola | cytosol, nucleus, plastid | 31.23 | 23.14 |
| Zm00001d037326_P001 | Maize | cytosol | 34.57 | 23.13 |
| Os06t0264300-01 | Rice | cytosol, nucleus, plastid | 35.32 | 23.0 |
| TraesCS7D01G209100.1 | Wheat | cytosol | 34.57 | 22.85 |
| KXG19738 | Sorghum | cytosol | 34.57 | 22.79 |
| GSMUA_Achr3P07380_001 | Banana | cytosol | 34.57 | 22.74 |
| Os09t0407200-01 | Rice | cytosol | 33.09 | 22.7 |
| Os08t0430200-01 | Rice | cytosol | 34.2 | 22.66 |
| TraesCS7B01G113500.1 | Wheat | cytosol | 34.2 | 22.6 |
| TraesCS7A01G206300.1 | Wheat | cytosol | 34.2 | 22.55 |
| HORVU5Hr1G060920.1 | Barley | mitochondrion | 35.69 | 22.17 |
| HORVU7Hr1G042100.8 | Barley | cytosol | 33.46 | 21.43 |
| CDX79333 | Canola | cytosol | 30.48 | 21.13 |
| CDX69473 | Canola | cytosol | 50.93 | 20.79 |
| Zm00001d005732_P001 | Maize | cytosol | 32.34 | 19.55 |
| GSMUA_Achr9P15580_001 | Banana | cytosol | 15.99 | 19.46 |
| CDX67983 | Canola | plastid | 30.48 | 19.16 |
| Os02t0465000-00 | Rice | cytosol | 6.32 | 18.48 |
| Zm00001d020419_P003 | Maize | cytosol | 28.25 | 16.63 |
Protein Annotations
| Gene3D:1.10.10.540 | Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078GMP7 | UniProt:A0A078GMP7 | EnsemblPlants:CDY26494 |
| ProteinID:CDY26494 | ProteinID:CDY26494.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003684 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006289 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0043161 |
| EnsemblPlantsGene:GSBRNA2T00035309001 | InterPro:IPR000626 | InterPro:IPR036353 | PFAM:PF00240 | PFAM:PF09280 | PFscan:PS50053 |
| PANTHER:PTHR10621 | PANTHER:PTHR10621:SF8 | SMART:SM00213 | SUPFAM:SSF101238 | SUPFAM:SSF54236 | UniParc:UPI0004EE2CC4 |
| InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | InterPro:XPC-bd | InterPro:XPC-bd_sf | SEG:seg | : |
Description
BnaC09g41740DBnaC09g41740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GMP7]
Coordinates
chrLK032190:-:475659..477916
Molecular Weight (calculated)
29401.7 Da
IEP (calculated)
4.062
GRAVY (calculated)
-0.752
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIFVKTLKG DRFEIQVNPE DSVTDVKKNI ETVLGVPSAE QGLIHKGKVL KDETTLEANN VSEKSIIAVM KRKPASTGTS TSSASLKPQV HAAHPSSAAS
101: NVSYESIPET DIQQILEIVS GTWSREAGLP VQSEDPYTTE GTQEHTQEPE APQDAVQEWS LDILRNTPEF EYLRAMVQSD PSLLEVTEEQ NPQLVQFILD
201: NKADFLRLVL EQPQEPNNGG DSGNQVGESE ETQVDQTEAD QTNKPNNGGD GANQVGESEE TEVETTKDA
101: NVSYESIPET DIQQILEIVS GTWSREAGLP VQSEDPYTTE GTQEHTQEPE APQDAVQEWS LDILRNTPEF EYLRAMVQSD PSLLEVTEEQ NPQLVQFILD
201: NKADFLRLVL EQPQEPNNGG DSGNQVGESE ETQVDQTEAD QTNKPNNGGD GANQVGESEE TEVETTKDA
001: MKIFVKTLSG SNFEIEVKPA DKVSDVKTAI ETVKGAEYPA AKQMLIHQGK VLKDETTLEE NNVVENSFIV IMLSKTKASP SGASTASAPA PSATQPQTVA
101: TPQVSAPTAS VPVPTSGTAT AAAPATAASV QTDVYGQAAS NLVAGTTLES TVQQILDMGG GSWDRDTVVR ALRAAFNNPE RAVEYLYSGI PAQAEIPPVA
201: QAPATGEQAA NPLAQPQQAA APAAATGGPN ANPLNLFPQG MPAADAGAGA GNLDFLRNSQ QFQALRAMVQ ANPQILQPML QELGKQNPQL VRLIQEHQAD
301: FLRLINEPVE GEEWECYGTV GSSNATSCYR YT
101: TPQVSAPTAS VPVPTSGTAT AAAPATAASV QTDVYGQAAS NLVAGTTLES TVQQILDMGG GSWDRDTVVR ALRAAFNNPE RAVEYLYSGI PAQAEIPPVA
201: QAPATGEQAA NPLAQPQQAA APAAATGGPN ANPLNLFPQG MPAADAGAGA GNLDFLRNSQ QFQALRAMVQ ANPQILQPML QELGKQNPQL VRLIQEHQAD
301: FLRLINEPVE GEEWECYGTV GSSNATSCYR YT
Arabidopsis Description
RAD23DUbiquitin receptor RAD23d [Source:UniProtKB/Swiss-Prot;Acc:Q84L30]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.