Factsheet for Zm00001d045665_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d015259_P001
Zm00001d024336_P001
Zm00001d028396_P001
Zm00001d040834_P001
Zm00001d047941_P001
Zm00001d053881_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02540.1	Zm00001d015259_P001	AT2G20580.1	21798944
AT3G02540.1	Zm00001d053881_P001	AT2G20580.1	21798944
AT3G02540.1	Zm00001d024336_P001	AT4G38630.1	20059542
AT3G02540.1	Zm00001d028396_P001	AT4G38630.1	20059542
AT3G02540.1	Zm00001d040834_P001	AT4G38630.1	20059542
AT3G02540.1	Zm00001d047941_P001	AT4G38630.1	20059542
AT5G38470.1	Zm00001d024336_P001	AT4G38630.1	20059542
AT5G38470.1	Zm00001d028396_P001	AT4G38630.1	20059542
AT5G38470.1	Zm00001d040834_P001	AT4G38630.1	20059542
AT5G38470.1	Zm00001d047941_P001	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037326_P001	Maize	cytosol	78.29	79.85
TraesCS7D01G209100.1	Wheat	cytosol	72.68	73.22
TraesCS7B01G113500.1	Wheat	cytosol	72.2	72.73
Os06t0264300-01	Rice	cytosol, nucleus, plastid	70.98	70.46
GSMUA_Achr9P15580_001	Banana	cytosol	36.83	68.33
TraesCS7A01G206300.1	Wheat	cytosol	66.83	67.16
HORVU7Hr1G042100.8	Barley	cytosol	65.12	63.57
GSMUA_Achr5P05860_001	Banana	cytosol	59.27	61.99
CDX74522	Canola	cytosol	57.32	61.84
CDY01661	Canola	cytosol	56.83	61.64
Bra028184.1-P	Field mustard	cytosol	56.83	61.64
KRH75377	Soybean	cytosol, nucleus	58.78	61.48
PGSC0003DMT400062159	Potato	cytosol	57.8	61.4
AT5G38470.1	Thale cress	cytosol	56.59	61.38
Solyc02g085840.2.1	Tomato	cytosol	58.05	61.18
Solyc02g063130.2.1	Tomato	cytosol, extracellular	56.83	60.84
PGSC0003DMT400032941	Potato	cytosol	57.8	60.77
Bra028408.1-P	Field mustard	cytosol	56.59	60.73
CDY58121	Canola	cytosol	56.83	60.68
CDX67404	Canola	cytosol	56.1	60.21
GSMUA_Achr3P07380_001	Banana	cytosol	60.0	60.15
VIT_01s0011g03410.t01	Wine grape	cytosol	57.56	59.45
VIT_14s0006g03040.t01	Wine grape	cytosol	55.12	59.32
KRH45279	Soybean	cytosol	56.83	58.1
Solyc04g007120.2.1	Tomato	cytosol, plastid	57.32	57.46
Bra001050.1-P	Field mustard	cytosol	54.88	56.11
KRG90804	Soybean	cytosol	54.88	55.97
CDX74251	Canola	cytosol	54.39	55.61
KRH35965	Soybean	cytosol	54.63	54.9
AT3G02540.1	Thale cress	cytosol	55.37	54.18
CDX91998	Canola	cytosol	53.17	54.09
AT5G16090.1	Thale cress	cytosol	20.73	49.71
KRH01763	Soybean	cytosol	45.37	49.6
Zm00001d005732_P001	Maize	cytosol	51.71	47.64
Zm00001d053738_P001	Maize	cytosol	41.22	45.92
Zm00001d020419_P003	Maize	cytosol	44.15	39.61
CDY26493	Canola	cytosol	30.98	35.77
CDX69474	Canola	cytosol	31.71	35.62
Bra008649.1-P	Field mustard	cytosol	29.76	35.47
CDY26494	Canola	nucleus	23.17	35.32
CDY26496	Canola	cytosol	29.02	33.15
CDX69472	Canola	cytosol	26.83	30.99
Bra008647.1-P	Field mustard	cytosol	26.83	30.99
CDY26495	Canola	cytosol	12.44	26.84
Bra008648.1-P	Field mustard	cytosol	28.78	18.82
CDX69473	Canola	cytosol	28.05	17.45

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	EntrezGene:100274222	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	UniProt:A0A1D6NY66
ProteinID:AQL02942.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006289	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0019538	GO:GO:0043161	InterPro:IPR000626	InterPro:IPR015940	InterPro:IPR036353
PFAM:PF00240	PFAM:PF00627	PFAM:PF09280	PRINTS:PR01839	PFscan:PS50030	PFscan:PS50053
PANTHER:PTHR10621	PANTHER:PTHR10621:SF8	InterPro:Rad23	SMART:SM00165	SMART:SM00213	SMART:SM00727
SUPFAM:SSF101238	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd	TIGRFAMs:TIGR00601	InterPro:UBA
InterPro:UBA-like_sf	UniParc:UPI000842375F	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	InterPro:XPC-bd	InterPro:XPC-bd_sf
EnsemblPlantsGene:Zm00001d045665	EnsemblPlants:Zm00001d045665_P003	EnsemblPlants:Zm00001d045665_T003	SEG:seg	:	:

Description

Ubiquitin receptor RAD23c

Coordinates

chr9:+:32284202..32295054

Molecular Weight (calculated)

43107.8 Da

IEP (calculated)

4.375

GRAVY (calculated)

-0.246

Length

410 amino acids

Sequence
(BLAST)

001: MKLNVKTLKG TNFEIEASPD ASVADVKRII ETTQGQSTYR ADQQMLIYQG KILKDETTLE SNGVAENSFL VIMLSKAKAS SSGASTATTA KAPATLAQPA
101: APVAPAASVA RTPTQAPVAT AETAPPSVQP QAAPAATVAA TDDADVYSQA ASNLVSGNNL EQTIQQILDM GGGTWERDTV VRALRAAYNN PERAIDYLYS
201: GIPENVEAQP VARAPAAGQQ TNQQAASPAQ PAVALPVQPS PASAGPNANP LNLFPQVCAI KGVPSGGSNP GVVPGAGSGA LDALRQLPQF QALLQLVQAN
301: PQILQPMLQE LGKQNPQILR LIQENQAEFL RLVNESPEGG PGGNILGQLA AAVPQTLTVT PEEREAIQRL EGMGFNRELV LEVFFACNKD EELTANYLLD
401: HGHEFDEQQQ

Best Arabidopsis Sequence Match ( AT5G38470.1 )
(BLAST)

001: MKIFVKTLSG SNFEIEVKPA DKVSDVKTAI ETVKGAEYPA AKQMLIHQGK VLKDETTLEE NNVVENSFIV IMLSKTKASP SGASTASAPA PSATQPQTVA
101: TPQVSAPTAS VPVPTSGTAT AAAPATAASV QTDVYGQAAS NLVAGTTLES TVQQILDMGG GSWDRDTVVR ALRAAFNNPE RAVEYLYSGI PAQAEIPPVA
201: QAPATGEQAA NPLAQPQQAA APAAATGGPN ANPLNLFPQG MPAADAGAGA GNLDFLRNSQ QFQALRAMVQ ANPQILQPML QELGKQNPQL VRLIQEHQAD
301: FLRLINEPVE GEENVMEQLE AAMPQAVTVT PEEREAIERL EGMGFDRAMV LEVFFACNKN EELAANYLLD HMHEFEDQ

Arabidopsis Description

RAD23DUbiquitin receptor RAD23d [Source:UniProtKB/Swiss-Prot;Acc:Q84L30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.