Factsheet for Bra008647.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69472	Canola	cytosol	100.0	100.0
Bra008649.1-P	Field mustard	cytosol	54.93	56.69
AT5G16090.1	Thale cress	cytosol	23.1	47.95
Bra028184.1-P	Field mustard	cytosol	36.06	33.86
Os02t0465000-00	Rice	cytosol	8.73	33.7
Bra028408.1-P	Field mustard	cytosol	36.06	33.51
GSMUA_Achr9P15590_001	Banana	cytosol	13.24	33.1
GSMUA_Achr5P05860_001	Banana	cytosol	34.93	31.63
Bra001050.1-P	Field mustard	cytosol	35.21	31.17
TraesCS5A01G204200.1	Wheat	cytosol	32.68	29.37
Os09t0407200-01	Rice	cytosol	31.55	28.57
GSMUA_Achr9P15580_001	Banana	cytosol	17.75	28.51
TraesCS5B01G204000.1	Wheat	cytosol	31.55	28.35
TraesCS5D01G211900.1	Wheat	cytosol	31.55	28.35
GSMUA_Achr3P07380_001	Banana	cytosol	32.39	28.12
KXG35597	Sorghum	cytosol	30.42	27.14
Zm00001d037326_P001	Maize	cytosol	30.7	27.11
KXG19738	Sorghum	cytosol	30.99	26.96
Os06t0264300-01	Rice	cytosol, nucleus, plastid	31.27	26.88
Os08t0430200-01	Rice	cytosol	30.7	26.85
Zm00001d045665_P003	Maize	cytosol	30.99	26.83
Bra008648.1-P	Field mustard	cytosol	47.04	26.63
TraesCS7D01G209100.1	Wheat	cytosol	30.42	26.54
HORVU5Hr1G060920.1	Barley	mitochondrion	32.11	26.33
TraesCS7B01G113500.1	Wheat	cytosol	30.14	26.29
TraesCS7A01G206300.1	Wheat	cytosol	29.58	25.74
Bra026076.1-P	Field mustard	cytosol	26.48	25.47
Bra026728.1-P	Field mustard	cytosol	25.63	25.35
Zm00001d005732_P001	Maize	cytosol	29.58	23.6
Zm00001d020419_P003	Maize	cytosol	29.01	22.54
HORVU7Hr1G042100.8	Barley	cytosol	26.2	22.14
Bra003599.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	25.92	21.4

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	Gene3D:3.10.20.90	MapMan:35.1	EnsemblPlantsGene:Bra008647	EnsemblPlants:Bra008647.1
EnsemblPlants:Bra008647.1-P	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006289	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0019538	GO:GO:0043161	InterPro:IPR000626	InterPro:IPR015940	InterPro:IPR036353
UniProt:M4CWQ0	PFAM:PF00240	PFAM:PF00627	PFAM:PF09280	PRINTS:PR01839	PFscan:PS50030
PFscan:PS50053	PANTHER:PTHR10621	PANTHER:PTHR10621:SF8	InterPro:Rad23	SMART:SM00165	SMART:SM00213
SUPFAM:SSF101238	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0002544C26
InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	InterPro:XPC-bd	InterPro:XPC-bd_sf	SEG:seg	:

Description

AT3G02540 (E=1e-019) RAD23-3 | RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3); damaged DNA binding

Coordinates

chrA10:+:13224287..13226393

Molecular Weight (calculated)

39194.2 Da

IEP (calculated)

4.034

GRAVY (calculated)

-0.634

Length

355 amino acids

Sequence
(BLAST)

001: MKIFVKTLKG DRFEIEVNLE DSVVDVKKNI ETVMGVTAEE QMLIHKGKVL KDETTMEANN VSEKSIIGVI KRKAASTATS TSTETPTEGA SAGASYVASE
101: RVSESSIQKI LGMVGEGWDR YMVTSALCLA DDDVNKALEY LYFELPRQIE DHYIAEGAQD QTQEYENPTE EDELRFFDYL NGSPEQEYLR ALARSDPGIV
201: KDFVEMLEEQ DPPIFVLIQD NKALFLRSLL EVQGGACGNE MEQAHEHQAV QTNEPNNGGD GDNQVGGESE ETKVEELQAD QTNKPNNGVD GGNQVVGESE
301: ETKAEVANAE DNELIEQLEA LGFERGDAEV AYFACNKNVQ EAANNLLGHK HESQE

Best Arabidopsis Sequence Match ( AT5G38470.1 )
(BLAST)

001: MKIFVKTLSG SNFEIEVKPA DKVSDVKTAI ETVKGAEYPA AKQMLIHQGK VLKDETTLEE NNVVENSFIV IMLSKTKASP SGASTASAPA PSATQPQTVA
101: TPQVSAPTAS VPVPTSGTAT AAAPATAASV QTDVYGQAAS NLVAGTTLES TVQQILDMGG GSWDRDTVVR ALRAAFNNPE RAVEYLYSGI PAQAEIPPVA
201: QAPATGEQAA NPLAQPQQAA APAAATGGPN ANPLNLFPQG MPAADAGAGA GNLDFLRNSQ QFQALRAMVQ ANPQILQPML QELGKQNPQL VRLIQEHQAD
301: FLRLINEPVE GEENVMEQLE AAMPQAVTVT PEEREAIERL EGMGFDRAMV LEVFFACNKN EELAANYLLD HMHEFEDQ

Arabidopsis Description

RAD23DUbiquitin receptor RAD23d [Source:UniProtKB/Swiss-Prot;Acc:Q84L30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.