Factsheet for Bra001050.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010735.1-P
Bra033573.1-P
Bra036488.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02540.1	Bra036488.1-P	AT2G20580.1	21798944
AT3G02540.1	Bra010735.1-P	AT4G38630.1	20059542
AT3G02540.1	Bra033573.1-P	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74251	Canola	cytosol	88.28	88.28
CDX91998	Canola	cytosol	84.79	84.37
AT3G02540.1	Thale cress	cytosol	81.3	77.8
GSMUA_Achr9P15580_001	Banana	cytosol	39.15	71.04
VIT_14s0006g03040.t01	Wine grape	cytosol	65.34	68.77
Bra028184.1-P	Field mustard	cytosol	64.59	68.52
Bra028408.1-P	Field mustard	cytosol	63.34	66.49
GSMUA_Achr5P05860_001	Banana	cytosol	62.84	64.29
Os02t0465000-00	Rice	cytosol	14.21	61.96
GSMUA_Achr3P07380_001	Banana	cytosol	63.09	61.86
Os06t0264300-01	Rice	cytosol, nucleus, plastid	59.35	57.63
TraesCS7B01G113500.1	Wheat	cytosol	58.35	57.49
TraesCS7D01G209100.1	Wheat	cytosol	58.35	57.49
Os09t0407200-01	Rice	cytosol	55.11	56.38
KXG19738	Sorghum	cytosol	57.36	56.37
GSMUA_Achr9P15590_001	Banana	cytosol	19.95	56.34
TraesCS7A01G206300.1	Wheat	cytosol	56.86	55.88
TraesCS5A01G204200.1	Wheat	cytosol	54.86	55.7
Zm00001d037326_P001	Maize	cytosol	55.61	55.47
Os08t0430200-01	Rice	cytosol	55.86	55.17
TraesCS5D01G211900.1	Wheat	cytosol	54.11	54.94
TraesCS5B01G204000.1	Wheat	cytosol	54.11	54.94
Zm00001d045665_P003	Maize	cytosol	56.11	54.88
KXG35597	Sorghum	cytosol	53.87	54.27
HORVU5Hr1G060920.1	Barley	mitochondrion	54.61	50.58
Bra026728.1-P	Field mustard	cytosol	45.14	50.42
HORVU7Hr1G042100.8	Barley	cytosol	51.87	49.52
Zm00001d005732_P001	Maize	cytosol	52.87	47.64
Bra026076.1-P	Field mustard	cytosol	43.64	47.43
Bra003599.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	43.89	40.93
Zm00001d020419_P003	Maize	cytosol	45.39	39.82
Bra008649.1-P	Field mustard	cytosol	32.67	38.08
Bra008647.1-P	Field mustard	cytosol	31.17	35.21
Bra008648.1-P	Field mustard	cytosol	33.17	21.21

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	EnsemblPlantsGene:Bra001050	EnsemblPlants:Bra001050.1
EnsemblPlants:Bra001050.1-P	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006139	GO:GO:0006259	GO:GO:0006289	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0031593	GO:GO:0043130	GO:GO:0043161
GO:GO:0070628	InterPro:IPR000626	InterPro:IPR015940	InterPro:IPR036353	UniProt:M4CA21	PFAM:PF00240
PFAM:PF00627	PFAM:PF09280	PRINTS:PR01839	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10621
PANTHER:PTHR10621:SF8	InterPro:Rad23	SMART:SM00165	SMART:SM00213	SMART:SM00727	SUPFAM:SSF101238
SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd	TIGRFAMs:TIGR00601	InterPro:UBA	InterPro:UBA-like_sf
UniParc:UPI00025408C9	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	InterPro:XPC-bd	InterPro:XPC-bd_sf	SEG:seg

Description

AT3G02540 (E=7e-111) RAD23-3 | RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3); damaged DNA binding

Coordinates

chrA03:-:14535400..14537995

Molecular Weight (calculated)

42262.0 Da

IEP (calculated)

4.411

GRAVY (calculated)

-0.243

Length

401 amino acids

Sequence
(BLAST)

001: MKIFVKTLKG THFEIEVKPE DSVADVKKNI ETVQGADVYP AAKLMLIHQG KVLKDETTIE ENKVAENSFI VIMMAKSKTA SAGASSASSG PTVQAKSMPT
101: SSTQPPASVA IPAATAPAPV AATETVAAPV PAPESVSTTP PASTPPPESI PAGSQGDVYG QAASNLAAGS NLESTILQIL DMGGGAWDRD TVVRALRAAF
201: NNPERAVEYL YSGIPEQAEV PPVARAPASG GQPANPPAQA QQPAAAPATG PNANPLDLFP QGLPNVGANP GGGTLDFLRN SQQFQALRAM VQANPQVLQP
301: MLQELGKQNP NLMRLIQEHQ ADFLRLINEP VEGGAEGANL FGEGMPQPQA IQVTPEERDA IERLEAMGFE RALVLEVFFA CNKNEELAAN YLLDHMHEFE
401: E

Best Arabidopsis Sequence Match ( AT3G02540.1 )
(BLAST)

001: MKIFVKTLKG THFEIEVKPE DSVVDVKKNI ESVQGADVYP AAKQMLIHQG KVLKDETTIE ENKVAENSFI VIMMNKSKPA SAAASSASAG TSQAKSIPPS
101: TSQPSISPQT PASVSAPVAP APTRPPPPAP TPTPAPVAAT ETVTTPIPEP VPATISSSTP APDSAPVGSQ GDVYGQAASN LAAGSNLEST IQQILDMGGG
201: TWDRETVVLA LRAAFNNPER AVEYLYTGIP EQAEVPPVAR PPASAGQPAN PPAQTQQPAA APASGPNANP LDLFPQGLPN VGGNPGAGTL DFLRNSQQFQ
301: ALRAMVQANP QVLQPMLQEL GKQNPNLMRL IQDHQADFLR LINEPVEGGG ESGNLLGQMA AGMPQPQAIQ VTHEEREAIE RLEAMGFERA LVLEVFFACN
401: KNEELAANYL LDHMHEFEE

Arabidopsis Description

RAD23CUbiquitin receptor RAD23c [Source:UniProtKB/Swiss-Prot;Acc:Q84L31]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.