Factsheet for HORVU5Hr1G060920.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G063820.1
HORVU6Hr1G021020.1
HORVU7Hr1G097500.16

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02540.1	HORVU6Hr1G021020.1	AT2G20580.1	21798944
AT3G02540.1	HORVU7Hr1G097500.16	AT2G20580.1	21798944
AT3G02540.1	HORVU4Hr1G063820.1	AT4G38630.1	20059542
AT5G38470.1	HORVU4Hr1G063820.1	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G211900.1	Wheat	cytosol	81.52	89.37
TraesCS5B01G204000.1	Wheat	cytosol	81.52	89.37
TraesCS5A01G204200.1	Wheat	cytosol	80.6	88.35
Os09t0407200-01	Rice	cytosol	68.82	76.02
KXG35597	Sorghum	cytosol	64.43	70.1
GSMUA_Achr9P15580_001	Banana	cytosol	33.26	65.16
GSMUA_Achr5P05860_001	Banana	cytosol	57.04	63.01
CDY01661	Canola	cytosol	54.97	62.96
Bra028184.1-P	Field mustard	cytosol	54.73	62.7
Solyc02g085840.2.1	Tomato	cytosol	55.66	61.95
AT5G38470.1	Thale cress	cytosol	54.04	61.9
CDX74522	Canola	cytosol	54.27	61.84
Solyc02g063130.2.1	Tomato	cytosol, extracellular	53.58	60.57
Bra028408.1-P	Field mustard	cytosol	53.35	60.47
CDY58121	Canola	cytosol	53.58	60.42
PGSC0003DMT400062159	Potato	cytosol	53.81	60.36
PGSC0003DMT400032941	Potato	cytosol	54.27	60.26
CDX67404	Canola	cytosol	53.12	60.21
KRG90804	Soybean	cytosol	54.5	58.71
GSMUA_Achr3P07380_001	Banana	cytosol	55.43	58.68
KRH75377	Soybean	cytosol, nucleus	52.89	58.42
KRH45279	Soybean	cytosol	53.81	58.1
KRH35965	Soybean	cytosol	54.73	58.09
Zm00001d005732_P001	Maize	cytosol	59.58	57.98
VIT_14s0006g03040.t01	Wine grape	cytosol	50.35	57.22
VIT_01s0011g03410.t01	Wine grape	cytosol	51.73	56.42
CDX74251	Canola	cytosol	51.73	55.86
Solyc04g007120.2.1	Tomato	cytosol, plastid	52.42	55.5
CDX91998	Canola	cytosol	51.27	55.09
Bra001050.1-P	Field mustard	cytosol	50.58	54.61
AT3G02540.1	Thale cress	cytosol	52.66	54.42
KRH01763	Soybean	cytosol	46.65	53.87
HORVU6Hr1G029720.1	Barley	cytosol, mitochondrion, nucleus	6.47	51.85
HORVU7Hr1G042100.8	Barley	cytosol	47.81	49.29
AT5G16090.1	Thale cress	cytosol	19.17	48.54
Zm00001d020419_P003	Maize	cytosol	50.81	48.14
HORVU6Hr1G029760.4	Barley	cytosol	33.72	42.69
CDY26493	Canola	cytosol	30.02	36.62
CDY26494	Canola	nucleus	22.17	35.69
Bra008649.1-P	Field mustard	cytosol	28.18	35.47
CDX69474	Canola	cytosol	29.79	35.34
CDX69472	Canola	cytosol	26.33	32.11
Bra008647.1-P	Field mustard	cytosol	26.33	32.11
CDY26496	Canola	cytosol	26.1	31.48
CDY26495	Canola	cytosol	10.39	23.68
Bra008648.1-P	Field mustard	cytosol	27.25	18.82
CDX69473	Canola	cytosol	27.71	18.21

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	UniProt:A0A287RFC7	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
GO:GO:0043161	EnsemblPlantsGene:HORVU5Hr1G060920	EnsemblPlants:HORVU5Hr1G060920.1	InterPro:IPR000626	InterPro:IPR015940	InterPro:IPR036353
PFAM:PF00240	PFAM:PF00627	PFAM:PF09280	PRINTS:PR01839	PFscan:PS50030	PFscan:PS50053
PANTHER:PTHR10621	PANTHER:PTHR10621:SF7	InterPro:Rad23	SMART:SM00165	SMART:SM00213	SMART:SM00727
SUPFAM:SSF101238	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd	TIGRFAMs:TIGR00601	InterPro:UBA
InterPro:UBA-like_sf	UniParc:UPI000B488951	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	InterPro:XPC-bd	InterPro:XPC-bd_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:-:477383274..477388290

Molecular Weight (calculated)

45997.2 Da

IEP (calculated)

4.258

GRAVY (calculated)

-0.298

Length

433 amino acids

Sequence
(BLAST)

001: KTEKTRRLLV LSPLSPLRLR LLSNSSSAAT DARERGGEMK VSVKTLKGSK FEIEVNPADK VSDVKKLIES SQGQNVYPAD QQMLIYQGSV LKDETTLEEN
101: KVVENNFLVI MLRQNKGSSS AAPAKSKEPS NQAPPTQTVP ATPASQAPAT PAPQAVSAPA PIVPVSAPAP AATASPAPAV AVSTEAETYG QAASNLVAGG
201: TLEATIQSIL EMGGGTWDRD TVLRALRAAF NNPERAVEYL YSGIPEPMEI PAPAPSAQPA DPAQASLATQ PAVASSGPNA SPLDLFPQAL PNASTNAAGE
301: GNLDVLRNNA QFRSLLSLVQ ANPQILQPLL QELGKQNPQI LQLIQDNQAE FLRLINEPAE GDEDENLLEQ FAEGVPQTIA VTPEENEAIL RLEGMGFDRA
401: LVLEVYFACN KDETLAANYL LDHMNEFDDG APQ

Best Arabidopsis Sequence Match ( AT5G38470.1 )
(BLAST)

001: MKIFVKTLSG SNFEIEVKPA DKVSDVKTAI ETVKGAEYPA AKQMLIHQGK VLKDETTLEE NNVVENSFIV IMLSKTKASP SGASTASAPA PSATQPQTVA
101: TPQVSAPTAS VPVPTSGTAT AAAPATAASV QTDVYGQAAS NLVAGTTLES TVQQILDMGG GSWDRDTVVR ALRAAFNNPE RAVEYLYSGI PAQAEIPPVA
201: QAPATGEQAA NPLAQPQQAA APAAATGGPN ANPLNLFPQG MPAADAGAGA GNLDFLRNSQ QFQALRAMVQ ANPQILQPML QELGKQNPQL VRLIQEHQAD
301: FLRLINEPVE GEENVMEQLE AAMPQAVTVT PEEREAIERL EGMGFDRAMV LEVFFACNKN EELAANYLLD HMHEFEDQ

Arabidopsis Description

RAD23DUbiquitin receptor RAD23d [Source:UniProtKB/Swiss-Prot;Acc:Q84L30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.