Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- peroxisome 1
- mitochondrion 2
- plastid 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G116500.1 | Wheat | golgi, unclear | 98.78 | 99.11 |
| TraesCS6D01G105500.1 | Wheat | golgi | 98.66 | 98.99 |
| TraesCS6B01G144500.1 | Wheat | cytosol | 98.78 | 98.12 |
| Zm00001d053881_P001 | Maize | mitochondrion, plastid | 91.65 | 92.26 |
| EES04513 | Sorghum | cytosol | 91.76 | 92.17 |
| Os02t0146700-02 | Rice | plasma membrane | 92.09 | 92.09 |
| Zm00001d015259_P001 | Maize | cytosol | 90.76 | 91.57 |
| GSMUA_Achr11P... | Banana | cytosol | 81.07 | 81.98 |
| Solyc07g053650.2.1 | Tomato | nucleus | 72.61 | 79.32 |
| VIT_12s0028g03130.t01 | Wine grape | cytosol | 77.17 | 77.87 |
| PGSC0003DMT400024306 | Potato | cytosol | 76.95 | 77.12 |
| KRH55899 | Soybean | endoplasmic reticulum, nucleus | 75.39 | 76.5 |
| KRH25643 | Soybean | endoplasmic reticulum, nucleus | 75.06 | 76.16 |
| AT2G20580.1 | Thale cress | cytosol | 74.16 | 74.75 |
| CDY38389 | Canola | cytosol, extracellular | 74.05 | 74.55 |
| Bra011030.1-P | Field mustard | cytosol | 73.72 | 74.3 |
| CDY35187 | Canola | cytosol, extracellular | 73.72 | 74.22 |
| Bra024200.1-P | Field mustard | cytosol | 73.5 | 74.07 |
| CDY29907 | Canola | extracellular | 73.39 | 73.96 |
| CDX92875 | Canola | extracellular | 73.39 | 73.96 |
| CDY05774 | Canola | cytosol | 73.61 | 73.77 |
| AT4G28470.1 | Thale cress | cytosol | 72.49 | 73.06 |
| CDY31952 | Canola | plasma membrane | 68.26 | 71.61 |
| Bra036488.1-P | Field mustard | cytosol, extracellular, plasma membrane | 65.81 | 70.95 |
| Bra010366.1-P | Field mustard | cytosol | 67.48 | 68.4 |
| CDX97442 | Canola | cytosol | 67.15 | 68.29 |
| CDY14239 | Canola | cytosol, extracellular | 67.37 | 68.13 |
| Solyc10g008180.1.1 | Tomato | plastid | 54.45 | 66.89 |
| AT4G08140.1 | Thale cress | cytosol | 5.9 | 63.1 |
| KRH57774 | Soybean | endoplasmic reticulum, plasma membrane | 20.38 | 62.67 |
| PGSC0003DMT400056260 | Potato | cytosol | 12.03 | 60.0 |
| Solyc10g008170.2.1 | Tomato | cytosol | 12.81 | 56.93 |
| KRH57675 | Soybean | cytosol | 18.71 | 55.45 |
| HORVU7Hr1G097500.16 | Barley | endoplasmic reticulum, golgi, plasma membrane | 35.97 | 55.12 |
| CDY72396 | Canola | cytosol | 8.35 | 52.08 |
| CDX99107 | Canola | cytosol | 11.47 | 39.77 |
| KRH30269 | Soybean | cytosol | 8.46 | 37.07 |
| CDY33144 | Canola | extracellular | 12.25 | 35.14 |
| CDY65736 | Canola | extracellular | 13.36 | 29.56 |
| GSMUA_Achr1P10580_001 | Banana | cytosol, nucleus, plasma membrane | 3.34 | 20.69 |
| Bra003811.1-P | Field mustard | endoplasmic reticulum | 4.57 | 16.67 |
| HORVU1Hr1G081810.8 | Barley | cytosol, plasma membrane | 15.7 | 14.75 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:19.2.6.2.2.1 | InterPro:26S_Psome_Rpn1 | EMBL:AK365978 | InterPro:ARM-like | InterPro:ARM-type_fold |
| UniProt:F2DQ10 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008540 | GO:GO:0009056 | GO:GO:0019538 |
| GO:GO:0030163 | GO:GO:0030234 | GO:GO:0042176 | GO:GO:0050790 | EnsemblPlantsGene:HORVU6Hr1G021020 | EnsemblPlants:HORVU6Hr1G021020.1 |
| InterPro:IPR011989 | PFAM:PF01851 | PIRSF:PIRSF015965 | PANTHER:PTHR10943 | PANTHER:PTHR10943:SF8 | InterPro:Proteasome/cyclosome_rpt |
| SUPFAM:SSF48371 | UniParc:UPI0002006CC1 | SEG:seg | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DQ10]
Coordinates
chrchr6H:-:61352928..61360430
Molecular Weight (calculated)
98127.3 Da
IEP (calculated)
4.822
GRAVY (calculated)
-0.040
Length
898 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPPENPNDG ASAAAPSPSE PTPPAKPSSS AKGKKKDEKK DDDLSEEDLA LKEQLELYVV RAQDVDPGVQ RLALESMRQE IRSATSSMTS VPKPLKFLRP
101: HYGTLKTYYE SMPESELKKY MADILSVLAL TMSAEGERES LRYRLLGSEG DIGSWGHEYV RNLAGEIAQE FQKRQGDDMP IDELMELVQQ IVSFHMKHNA
201: EPEAVDLLME VEDLDLLVEH VDSTNYKRTC LYLTSSARFL SSPDDTLALD IAYTIYMKFE DLASALRIAL LLDNKSIQYV KQVYTATDDL VLKKQFSYII
301: ARHGLAMEID DEIAADENDK EMLQEIVNNT KLSEGYLTLA RDIEVMEAKS PEDIYKVHLI DGRGASSSLD SARQNLAATF VNAFVNAGFG QDKLMTAPSD
401: SSSSGSSGNW LFKNKEHGKA SAAASLGMIL LWDTDSGLAQ LDKYLHSTDT HVVAGALLGI GVVTCGVKND CDPALAILME YVNKDDSNIR IGAILGLGIA
501: YAGSQKDELR VQLSAILGDP QATLEVLVFT AVALGLVFVG SCNEEIAQSI IFFLMERSEA ELAEPIIRLL PVALGLLYLG KQESVEATAE VSKTFDEKIR
601: KYCDVTLMSL AYAGTGNVLK VQKLLGICSQ HLEKGETHQG PAVLGIALIA MSEELGAEMA VRSLERLLQY GEQNIRRAVP LALGILCISN PKVNVMDTLS
701: RLSHDADADV SMAAIISLGL IGAGTNNARI AGMLRNLSSY YYKEAAHLFC VRIAQGLVHL GKGLLTLSPY HSDRFLLSPM ALGGIVTVLH ACLDMKSTIL
801: GKYHYILYII VLAMQPRMLL TVDEDLKPLP VPVRVGQAVD VVGQAGRPKT ITGFQTHTTP VLLAAGERAE LATDKYIPLT STLEGFVILK KNPEYHEE
101: HYGTLKTYYE SMPESELKKY MADILSVLAL TMSAEGERES LRYRLLGSEG DIGSWGHEYV RNLAGEIAQE FQKRQGDDMP IDELMELVQQ IVSFHMKHNA
201: EPEAVDLLME VEDLDLLVEH VDSTNYKRTC LYLTSSARFL SSPDDTLALD IAYTIYMKFE DLASALRIAL LLDNKSIQYV KQVYTATDDL VLKKQFSYII
301: ARHGLAMEID DEIAADENDK EMLQEIVNNT KLSEGYLTLA RDIEVMEAKS PEDIYKVHLI DGRGASSSLD SARQNLAATF VNAFVNAGFG QDKLMTAPSD
401: SSSSGSSGNW LFKNKEHGKA SAAASLGMIL LWDTDSGLAQ LDKYLHSTDT HVVAGALLGI GVVTCGVKND CDPALAILME YVNKDDSNIR IGAILGLGIA
501: YAGSQKDELR VQLSAILGDP QATLEVLVFT AVALGLVFVG SCNEEIAQSI IFFLMERSEA ELAEPIIRLL PVALGLLYLG KQESVEATAE VSKTFDEKIR
601: KYCDVTLMSL AYAGTGNVLK VQKLLGICSQ HLEKGETHQG PAVLGIALIA MSEELGAEMA VRSLERLLQY GEQNIRRAVP LALGILCISN PKVNVMDTLS
701: RLSHDADADV SMAAIISLGL IGAGTNNARI AGMLRNLSSY YYKEAAHLFC VRIAQGLVHL GKGLLTLSPY HSDRFLLSPM ALGGIVTVLH ACLDMKSTIL
801: GKYHYILYII VLAMQPRMLL TVDEDLKPLP VPVRVGQAVD VVGQAGRPKT ITGFQTHTTP VLLAAGERAE LATDKYIPLT STLEGFVILK KNPEYHEE
001: MAPTQDPNSV GGGAKKDEAT LKVPSKDPKK KDEKKDEDLS EEDLELKQNL ELYVERVQDP NPELQKAALE SMRQEIRAST SSMTSVPKPL KFLRPHYGTL
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E
Arabidopsis Description
RPN1ARPN1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.