Factsheet for Solyc10g008170.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400056260	Potato	cytosol	79.7	89.44
AT4G08140.1	Thale cress	cytosol	24.26	58.33
CDY72396	Canola	cytosol	39.11	54.86
CDX99107	Canola	cytosol	44.55	34.75
CDY33144	Canola	extracellular	45.05	29.07
CDY65736	Canola	extracellular	45.54	22.66
GSMUA_Achr11P...	Banana	cytosol	60.4	13.74
Os02t0146700-02	Rice	plasma membrane	59.41	13.36
TraesCS6D01G105500.1	Wheat	golgi	57.43	12.96
TraesCS6A01G116500.1	Wheat	golgi, unclear	57.43	12.96
Os06t0699900-01	Rice	plasma membrane	57.43	12.87
EES04513	Sorghum	cytosol	56.93	12.86
TraesCS6B01G144500.1	Wheat	cytosol	57.43	12.83
Zm00001d015259_P001	Maize	cytosol	56.44	12.81
HORVU6Hr1G021020.1	Barley	cytosol	56.93	12.81
Zm00001d053881_P001	Maize	mitochondrion, plastid	55.94	12.67
Os09t0326800-01	Rice	plasma membrane	55.45	12.57
TraesCS7D01G413800.1	Wheat	cytosol	34.65	11.29
Solyc07g053650.2.1	Tomato	nucleus	45.05	11.07
TraesCS7B01G321900.1	Wheat	cytosol	45.05	10.5
TraesCS7B01G322000.1	Wheat	cytosol	44.55	10.23
TraesCS7A01G421700.1	Wheat	cytosol	44.06	10.11
TraesCS7A01G421600.1	Wheat	mitochondrion	33.66	8.32
TraesCS7D01G413900.1	Wheat	mitochondrion	32.18	7.82
KRH30269	Soybean	cytosol	7.92	7.8
HORVU7Hr1G097500.16	Barley	endoplasmic reticulum, golgi, plasma membrane	11.88	4.1
Bra003811.1-P	Field mustard	endoplasmic reticulum	2.97	2.44
Solyc09g091750.2.1	Tomato	plastid	6.44	1.29
Solyc05g053650.2.1	Tomato	endoplasmic reticulum	5.94	1.21
Solyc10g008180.1.1	Tomato	plastid	2.97	0.82
GSMUA_Achr1P10580_001	Banana	cytosol, nucleus, plasma membrane	0.5	0.69
KRH57675	Soybean	cytosol	0.0	0.0

Protein Annotations

MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0008152
GO:GO:0008540	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0034515
GO:GO:0043161	UniProt:K4CXZ4	PANTHER:PTHR10943	PANTHER:PTHR10943:SF8	EnsemblPlantsGene:Solyc10g008170.2	EnsemblPlants:Solyc10g008170.2.1
UniParc:UPI000276B7A4	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10:+:2300710..2304760

Molecular Weight (calculated)

22352.8 Da

IEP (calculated)

8.115

GRAVY (calculated)

-0.591

Length

202 amino acids

Sequence
(BLAST)

001: MSKTPNPNST GSSGNADAGK PAGEEATVKV PSKDSKKKND KKCEHLSEED LALKQQLEQC VKRIQDADPG LQKVALESMR QEIRTATISM TVLKPLKFLR
101: PHYGTLKGFY EKMPDSDLKT LLADILSVLA LTMSAEGERE SLKYRVLGSQ GDIGSWGHEY VRNLAGEVGQ EYVRLEVGVP YSRGSCKVCT ECSCQQFIQH
201: RM

Best Arabidopsis Sequence Match ( AT2G20580.1 )
(BLAST)

001: MAPTQDPNSV GGGAKKDEAT LKVPSKDPKK KDEKKDEDLS EEDLELKQNL ELYVERVQDP NPELQKAALE SMRQEIRAST SSMTSVPKPL KFLRPHYGTL
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E

Arabidopsis Description

RPN1ARPN1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZC8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.