Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G413900.1 | Wheat | mitochondrion | 93.07 | 98.56 |
| TraesCS7B01G322000.1 | Wheat | cytosol | 95.8 | 95.8 |
| TraesCS7A01G421600.1 | Wheat | mitochondrion | 75.91 | 81.76 |
| Os09t0326800-01 | Rice | plasma membrane | 68.52 | 67.68 |
| Os06t0699900-01 | Rice | plasma membrane | 68.64 | 67.04 |
| TraesCS6A01G116500.1 | Wheat | golgi, unclear | 67.39 | 66.26 |
| HORVU7Hr1G097500.16 | Barley | endoplasmic reticulum, golgi, plasma membrane | 43.41 | 65.19 |
| GSMUA_Achr11P... | Banana | cytosol | 64.09 | 63.51 |
| Solyc07g053650.2.1 | Tomato | nucleus | 58.3 | 62.41 |
| KRH25643 | Soybean | endoplasmic reticulum, nucleus | 60.34 | 60.0 |
| VIT_12s0028g03130.t01 | Wine grape | cytosol | 60.68 | 60.0 |
| KRH55899 | Soybean | endoplasmic reticulum, nucleus | 60.23 | 59.89 |
| PGSC0003DMT400024306 | Potato | cytosol | 60.34 | 59.26 |
| AT4G28470.1 | Thale cress | cytosol | 58.86 | 58.14 |
| CDY38389 | Canola | cytosol, extracellular | 58.75 | 57.96 |
| Bra011030.1-P | Field mustard | cytosol | 58.52 | 57.8 |
| AT2G20580.1 | Thale cress | cytosol | 58.52 | 57.8 |
| CDY35187 | Canola | cytosol, extracellular | 58.52 | 57.74 |
| CDY05774 | Canola | cytosol | 58.75 | 57.7 |
| Bra036488.1-P | Field mustard | cytosol, extracellular, plasma membrane | 54.43 | 57.5 |
| Bra024200.1-P | Field mustard | cytosol | 58.07 | 57.35 |
| CDY29907 | Canola | extracellular | 57.95 | 57.24 |
| CDX92875 | Canola | extracellular | 57.95 | 57.24 |
| Solyc10g008180.1.1 | Tomato | plastid | 47.16 | 56.77 |
| Bra010366.1-P | Field mustard | cytosol | 57.05 | 56.66 |
| CDY31952 | Canola | plasma membrane | 55.11 | 56.66 |
| CDY14239 | Canola | cytosol, extracellular | 56.93 | 56.42 |
| CDX97442 | Canola | cytosol | 56.36 | 56.17 |
| KRH57774 | Soybean | endoplasmic reticulum, plasma membrane | 17.84 | 53.77 |
| AT4G08140.1 | Thale cress | cytosol | 4.89 | 51.19 |
| PGSC0003DMT400056260 | Potato | cytosol | 9.43 | 46.11 |
| KRH57675 | Soybean | cytosol | 15.8 | 45.87 |
| Solyc10g008170.2.1 | Tomato | cytosol | 10.11 | 44.06 |
| CDY72396 | Canola | cytosol | 6.7 | 40.97 |
| KRH30269 | Soybean | cytosol | 8.41 | 36.1 |
| CDX99107 | Canola | cytosol | 8.3 | 28.19 |
| CDY33144 | Canola | extracellular | 9.43 | 26.52 |
| CDY65736 | Canola | extracellular | 10.8 | 23.4 |
| GSMUA_Achr1P10580_001 | Banana | cytosol, nucleus, plasma membrane | 3.18 | 19.31 |
| Bra003811.1-P | Field mustard | endoplasmic reticulum | 4.43 | 15.85 |
| TraesCS1A01G348400.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 14.55 | 13.6 |
| TraesCS2A01G430100.2 | Wheat | golgi | 15.68 | 13.27 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:19.2.6.2.2.1 | InterPro:26S_Psome_Rpn1 | InterPro:ARM-like | InterPro:ARM-type_fold | GO:GO:0000502 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0019538 | GO:GO:0030234 | GO:GO:0042176 | InterPro:IPR011989 |
| PFAM:PF01851 | PIRSF:PIRSF015965 | PANTHER:PTHR10943 | PANTHER:PTHR10943:SF8 | InterPro:Proteasome/cyclosome_rpt | SUPFAM:SSF48371 |
| EnsemblPlantsGene:TraesCS7A01G421700 | EnsemblPlants:TraesCS7A01G421700.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr7A:+:612589475..612597437
Molecular Weight (calculated)
96543.5 Da
IEP (calculated)
5.254
GRAVY (calculated)
0.093
Length
880 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGDDLSEED LELKARLEDC VQLAQSGDPR LRVEAIDTLR KEIRAATSSM TSVPKPLKFL RAHYGTLKAC FQRMRDPAQK KHMADILSVL ALTASAEGER
101: ESLKYCMMGS LVDICSWGHV YVRNLAFEIG KEWKDNGSST PIESKIELVL EIVKFHMKHN AETEALDLLM EVGYLEMLLD EKYEEYLARL FCLVDSTNYK
201: RACLYLTTSS KYLLTPDREA YEATLYIAFG MYGKFRDLAS ALRIVLLVND DKCCDQSVKI VFAETEDFSL KQQLAFMIAR YGLSMEVDDD MVADENEKNA
301: LQEVVNNTKL SEGYHMLARD IGVMKPKSPE DIYKVHLIGG QGAKSSSLDS ARQNLAATFV NAFVNAGYCQ DKLMTAISDS SENLLFEKNE LGKASAVASL
401: GMIHLWDHDS GFAILDKYLQ SDDTHVVAGA LLGIGMVSCG VKNDYDPALA LISGYSTSAA SITRIGAILG LGIAYAGSRK DKLKSLFLIT LSDSQAPLVD
501: LVFSAISLGL VFVGSCNEEI AQSIISVLKN LIKAELAEPI IRLLPVSIGL LYLGKQEGPK ANVVKVSETF DEIMKEVSKF FDKIMKDYWD VTLMSLAYAG
601: TGNVLKVQEL LSICSKKEGG SHQGPAVLGI ALIAMAEELG VEMAVRSLEQ LFKYGDYNIR RAVPLALGML YISNPKVDVV DTLSRLSNDA DGQVMMAATI
701: SLGLIGAGTN NARIAELLRN LSSQEHGVYL FCVRIAQGLV HLGKGLLTLA PYHSDRLLLS PVALAGLVTV LHACLNMQPT ILGEYPYMLY ILALAMQPRM
801: LLTLDEDLKP LPVPVHVGQA VDVVGQAGSP RTITGFQTHN TPVLLAAGER AELATEKYIP LTPVLEGFVI LRKNPEHHED
101: ESLKYCMMGS LVDICSWGHV YVRNLAFEIG KEWKDNGSST PIESKIELVL EIVKFHMKHN AETEALDLLM EVGYLEMLLD EKYEEYLARL FCLVDSTNYK
201: RACLYLTTSS KYLLTPDREA YEATLYIAFG MYGKFRDLAS ALRIVLLVND DKCCDQSVKI VFAETEDFSL KQQLAFMIAR YGLSMEVDDD MVADENEKNA
301: LQEVVNNTKL SEGYHMLARD IGVMKPKSPE DIYKVHLIGG QGAKSSSLDS ARQNLAATFV NAFVNAGYCQ DKLMTAISDS SENLLFEKNE LGKASAVASL
401: GMIHLWDHDS GFAILDKYLQ SDDTHVVAGA LLGIGMVSCG VKNDYDPALA LISGYSTSAA SITRIGAILG LGIAYAGSRK DKLKSLFLIT LSDSQAPLVD
501: LVFSAISLGL VFVGSCNEEI AQSIISVLKN LIKAELAEPI IRLLPVSIGL LYLGKQEGPK ANVVKVSETF DEIMKEVSKF FDKIMKDYWD VTLMSLAYAG
601: TGNVLKVQEL LSICSKKEGG SHQGPAVLGI ALIAMAEELG VEMAVRSLEQ LFKYGDYNIR RAVPLALGML YISNPKVDVV DTLSRLSNDA DGQVMMAATI
701: SLGLIGAGTN NARIAELLRN LSSQEHGVYL FCVRIAQGLV HLGKGLLTLA PYHSDRLLLS PVALAGLVTV LHACLNMQPT ILGEYPYMLY ILALAMQPRM
801: LLTLDEDLKP LPVPVHVGQA VDVVGQAGSP RTITGFQTHN TPVLLAAGER AELATEKYIP LTPVLEGFVI LRKNPEHHED
001: MAPTQDPNSV GGGAKKDEAT LKVPSKDPKK KDEKKDEDLS EEDLELKQNL ELYVERVQDP NPELQKAALE SMRQEIRAST SSMTSVPKPL KFLRPHYGTL
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E
Arabidopsis Description
RPN1ARPN1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.