Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G190600.1 | Wheat | cytosol, golgi | 99.78 | 99.78 |
| HORVU4Hr1G055060.1 | Barley | cytosol | 99.78 | 99.78 |
| TraesCS4B01G189200.1 | Wheat | cytosol | 99.56 | 99.56 |
| Os03t0298400-01 | Rice | plasma membrane | 97.11 | 97.11 |
| TraesCS2A01G090000.1 | Wheat | cytosol | 95.78 | 95.99 |
| Zm00001d028801_P001 | Maize | cytosol, extracellular | 94.44 | 95.29 |
| GSMUA_Achr4P05850_001 | Banana | cytosol | 88.22 | 93.63 |
| GSMUA_Achr4P05840_001 | Banana | cytosol | 86.67 | 92.64 |
| KRG95799 | Soybean | cytosol, nucleus | 91.56 | 92.38 |
| KRH67524 | Soybean | nucleus | 91.33 | 92.15 |
| AT4G29040.1 | Thale cress | cytosol | 90.67 | 92.1 |
| VIT_07s0005g05160.t01 | Wine grape | cytosol | 90.89 | 91.91 |
| AT2G20140.1 | Thale cress | cytosol | 90.44 | 91.87 |
| KRH19693 | Soybean | cytosol | 90.44 | 91.87 |
| KRH32292 | Soybean | cytosol, nucleus | 90.44 | 91.87 |
| CDY14224 | Canola | cytosol | 90.67 | 91.69 |
| Bra010342.1-P | Field mustard | cytosol | 90.67 | 91.69 |
| CDX97472 | Canola | cytosol | 90.44 | 91.46 |
| PGSC0003DMT400040872 | Potato | cytosol | 90.22 | 91.44 |
| Solyc06g083620.2.1 | Tomato | nucleus, plastid | 90.22 | 91.44 |
| CDY35245 | Canola | cytosol | 90.0 | 91.42 |
| Bra011079.1-P | Field mustard | cytosol | 90.0 | 91.42 |
| CDX92914 | Canola | cytosol, extracellular | 90.0 | 91.42 |
| CDY06847 | Canola | cytosol | 89.78 | 91.2 |
| PGSC0003DMT400051744 | Potato | cytosol | 89.78 | 90.99 |
| CDY59958 | Canola | cytosol | 62.0 | 76.65 |
| Bra024165.1-P | Field mustard | cytosol | 54.89 | 76.47 |
| TraesCS2A01G086400.1 | Wheat | cytosol | 41.33 | 44.82 |
| TraesCS2A01G475900.1 | Wheat | cytosol | 41.33 | 43.56 |
| TraesCS3A01G421900.1 | Wheat | cytosol | 40.22 | 41.71 |
| TraesCS6A01G177600.1 | Wheat | cytosol | 38.67 | 41.63 |
| TraesCS7A01G372600.1 | Wheat | cytosol | 39.11 | 41.61 |
| TraesCS6A01G162700.2 | Wheat | cytosol, golgi | 36.89 | 41.5 |
| TraesCS7A01G378600.1 | Wheat | cytosol | 36.67 | 41.25 |
| TraesCS7A01G545700.1 | Wheat | cytosol | 35.11 | 39.7 |
| TraesCS7A01G156800.1 | Wheat | cytosol | 36.67 | 38.73 |
| TraesCS2A01G471400.1 | Wheat | cytosol | 38.0 | 37.5 |
| TraesCS2A01G355200.1 | Wheat | cytosol | 28.22 | 22.4 |
| TraesCS7A01G025800.1 | Wheat | mitochondrion | 28.22 | 16.18 |
| TraesCS3A01G144500.1 | Wheat | cytosol | 19.11 | 16.14 |
| TraesCS3A01G450800.1 | Wheat | mitochondrion | 26.67 | 16.09 |
| TraesCS4A01G463300.1 | Wheat | mitochondrion | 28.0 | 16.05 |
| TraesCS1A01G190300.1 | Wheat | cytosol | 28.22 | 15.72 |
| TraesCS3A01G145100.1 | Wheat | cytosol | 27.33 | 15.59 |
| TraesCS4A01G035500.1 | Wheat | golgi, nucleus | 28.22 | 15.53 |
| TraesCS1A01G222100.1 | Wheat | cytosol | 27.56 | 15.5 |
| TraesCS4A01G035700.1 | Wheat | plastid | 28.0 | 15.5 |
| TraesCS3A01G145000.1 | Wheat | cytosol | 22.89 | 14.8 |
| TraesCS2A01G060000.1 | Wheat | cytosol | 27.56 | 14.35 |
| TraesCS2A01G457600.3 | Wheat | mitochondrion | 26.67 | 12.86 |
| TraesCS1A01G071300.1 | Wheat | cytosol, plastid | 28.44 | 12.74 |
| TraesCS4A01G204700.1 | Wheat | cytosol, plastid | 28.22 | 12.62 |
| TraesCS1A01G248500.1 | Wheat | cytosol | 16.44 | 12.4 |
| TraesCS7A01G277100.1 | Wheat | peroxisome | 24.44 | 10.09 |
| TraesCS5A01G301500.1 | Wheat | mitochondrion | 22.89 | 9.57 |
Protein Annotations
| Gene3D:1.10.8.60 | MapMan:19.2.6.2.1.2 | Gene3D:2.40.50.140 | InterPro:26S_Psome_P45-like | InterPro:26S_subunit_4 | Gene3D:3.40.50.300 |
| InterPro:AAA+_ATPase | InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0030163 | GO:GO:0036402 | InterPro:P-loop_NTPase | PFAM:PF00004 | ScanProsite:PS00674 | PANTHER:PTHR23073 |
| PANTHER:PTHR23073:SF42 | SMART:SM00382 | SUPFAM:SSF52540 | TIGRFAMs:TIGR01242 | EnsemblPlantsGene:TraesCS4A01G115000 | EnsemblPlants:TraesCS4A01G115000.1 |
| TIGR:cd00009 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr4A:+:139869698..139872894
Molecular Weight (calculated)
49721.1 Da
IEP (calculated)
6.073
GRAVY (calculated)
-0.396
Length
450 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQGSPGGMG KQGGLPGDRK PGDGAAGDKK DKKFEPPAAS SRVGRKQRKQ RGPEAAARLP PVAPLSKCRL RLLKLDRVKD YLLMEEEFVA SQERLRPSED
101: KTEEDRSKVD DLRGTPMSVG SLEEIIDESH AIVSSSVGPE YYVSVLSFVD KDQLEPGCSI LMHNKVLSVV GILQDEVDPM VSVMKVEKAP LESYADIGGL
201: DAQIQEIKEA VELPLTHPEL YEDIGIRPPK GVILYGEPGT GKTLLAKAVA NSTSATFLRV VGSELIQKYL GDGPKLVREL FRVADDLSPS IVFIDEIDAV
301: GTKRYDAHSG GEREIQRTML ELLNQLDGFD SRGDVKVILA TNRIESLDPA LLRPGRIDRK IEFPLPDIKT RRRIFQIHTA KMTLAEDVNL EEFVMTKDEF
401: SGADIKAICT EAGLLALRER RMKVTHADFK KAKEKVMFKK KEGVPEGLYM
101: KTEEDRSKVD DLRGTPMSVG SLEEIIDESH AIVSSSVGPE YYVSVLSFVD KDQLEPGCSI LMHNKVLSVV GILQDEVDPM VSVMKVEKAP LESYADIGGL
201: DAQIQEIKEA VELPLTHPEL YEDIGIRPPK GVILYGEPGT GKTLLAKAVA NSTSATFLRV VGSELIQKYL GDGPKLVREL FRVADDLSPS IVFIDEIDAV
301: GTKRYDAHSG GEREIQRTML ELLNQLDGFD SRGDVKVILA TNRIESLDPA LLRPGRIDRK IEFPLPDIKT RRRIFQIHTA KMTLAEDVNL EEFVMTKDEF
401: SGADIKAICT EAGLLALRER RMKVTHADFK KAKEKVMFKK KEGVPEGLYM
001: MGQGPSGGLN RQGDRKPDGG DKKEKKFEPA APPARVGRKQ RKQKGPEAAA RLPTVTPSTK CKLRLLKLER IKDYLLMEEE FVANQERLKP QEEKAEEDRS
101: KVDDLRGTPM SVGNLEELID ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE KAPLESYADI GGLEAQIQEI
201: KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA
301: HSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD IKTRRRIFQI HTSKMTLSED VNLEEFVMTK DEFSGADIKA
401: ICTEAGLLAL RERRMKVTHP DFKKAKEKVM FKKKEGVPEG LYM
101: KVDDLRGTPM SVGNLEELID ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE KAPLESYADI GGLEAQIQEI
201: KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA
301: HSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD IKTRRRIFQI HTSKMTLSED VNLEEFVMTK DEFSGADIKA
401: ICTEAGLLAL RERRMKVTHP DFKKAKEKVM FKKKEGVPEG LYM
Arabidopsis Description
RPT2ARPT2a [Source:UniProtKB/TrEMBL;Acc:A0A178V3V3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.