Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG99061 | Soybean | cytosol | 26.63 | 79.5 |
| KRG94277 | Soybean | cytosol | 24.96 | 71.98 |
| TraesCS3A01G145000.1 | Wheat | cytosol | 79.73 | 68.39 |
| TraesCS3B01G172000.1 | Wheat | cytosol | 89.61 | 68.24 |
| HORVU0Hr1G006340.1 | Barley | cytosol | 89.45 | 67.77 |
| TraesCS3A01G145100.1 | Wheat | cytosol | 89.45 | 67.68 |
| TraesCS3D01G153900.1 | Wheat | cytosol | 88.94 | 67.39 |
| HORVU3Hr1G029450.1 | Barley | cytosol | 89.45 | 66.09 |
| HORVU3Hr1G029440.1 | Barley | cytosol | 89.45 | 65.6 |
| TraesCS3A01G144500.1 | Wheat | cytosol | 57.12 | 63.98 |
| EER95525 | Sorghum | cytosol | 79.9 | 61.15 |
| KXG40206 | Sorghum | cytosol | 79.73 | 60.87 |
| CDX78154 | Canola | cytosol | 75.04 | 60.22 |
| CDX73571 | Canola | cytosol | 74.54 | 59.89 |
| CDY11249 | Canola | cytosol | 79.4 | 59.4 |
| VIT_08s0040g01480.t01 | Wine grape | cytosol | 79.9 | 59.18 |
| KRH67721 | Soybean | endoplasmic reticulum, nucleus | 80.07 | 59.16 |
| CDY13308 | Canola | cytosol | 80.23 | 59.14 |
| AT3G09840.1 | Thale cress | cytosol | 80.07 | 59.09 |
| KRG96011 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 79.9 | 59.03 |
| CDY07941 | Canola | cytosol | 79.9 | 58.96 |
| KRH19916 | Soybean | endoplasmic reticulum, mitochondrion | 80.07 | 58.94 |
| CDY41316 | Canola | cytosol, extracellular | 79.9 | 58.89 |
| Bra003123.1-P | Field mustard | cytosol | 79.9 | 58.89 |
| CDX73996 | Canola | cytosol | 79.73 | 58.84 |
| Bra001297.1-P | Field mustard | cytosol | 79.73 | 58.84 |
| KRH32530 | Soybean | endoplasmic reticulum, mitochondrion | 80.07 | 58.79 |
| TraesCS4A01G035700.1 | Wheat | plastid | 80.07 | 58.79 |
| CDY54618 | Canola | cytosol | 79.56 | 58.79 |
| Bra034089.1-P | Field mustard | cytosol | 79.73 | 58.77 |
| CDY41581 | Canola | cytosol | 79.4 | 58.66 |
| Solyc10g084050.1.1 | Tomato | cytosol, nucleus, plastid, unclear | 79.4 | 58.66 |
| PGSC0003DMT400027096 | Potato | cytosol | 79.4 | 58.66 |
| CDY22207 | Canola | cytosol | 79.56 | 58.64 |
| AT5G03340.1 | Thale cress | cytosol | 79.56 | 58.64 |
| PGSC0003DMT400050662 | Potato | cytosol | 79.06 | 58.63 |
| KRH22853 | Soybean | cytosol, endoplasmic reticulum, mitochondrion | 79.23 | 58.61 |
| KRH26511 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 79.23 | 58.61 |
| Bra029795.1-P | Field mustard | cytosol | 79.4 | 58.59 |
| AT3G53230.1 | Thale cress | cytosol | 79.9 | 58.53 |
| Solyc06g074980.2.1 | Tomato | nucleus | 78.89 | 58.51 |
| Solyc11g069720.1.1 | Tomato | cytosol, extracellular, nucleus, plastid | 78.89 | 58.51 |
| PGSC0003DMT400031321 | Potato | cytosol | 78.89 | 58.51 |
| TraesCS1A01G222100.1 | Wheat | cytosol | 78.39 | 58.5 |
| TraesCS4A01G035500.1 | Wheat | golgi, nucleus | 80.07 | 58.44 |
| CDX80862 | Canola | cytosol, plastid | 79.06 | 58.34 |
| PGSC0003DMT400055513 | Potato | cytosol | 78.73 | 58.24 |
| KRH30601 | Soybean | cytosol | 78.39 | 58.06 |
| KRH25081 | Soybean | cytosol, endoplasmic reticulum, mitochondrion | 70.02 | 57.73 |
| Bra006978.1-P | Field mustard | cytosol | 78.39 | 57.71 |
| Solyc09g008070.2.1 | Tomato | cytosol, unclear | 77.89 | 57.55 |
| VIT_06s0061g00340.t01 | Wine grape | cytosol | 73.53 | 57.39 |
| KRH45638 | Soybean | cytosol | 30.82 | 57.32 |
| TraesCS1A01G190300.1 | Wheat | cytosol | 77.39 | 57.18 |
| CDX67563 | Canola | cytosol | 78.06 | 53.01 |
| TraesCS2A01G060000.1 | Wheat | cytosol | 65.16 | 45.02 |
| Bra005733.1-P | Field mustard | cytosol | 79.4 | 42.93 |
| TraesCS2A01G355200.1 | Wheat | cytosol | 27.97 | 29.45 |
| TraesCS7A01G025800.1 | Wheat | mitochondrion | 33.0 | 25.1 |
| TraesCS4A01G463300.1 | Wheat | mitochondrion | 32.83 | 24.97 |
| TraesCS3A01G450800.1 | Wheat | mitochondrion | 31.16 | 24.93 |
| TraesCS7A01G156800.1 | Wheat | cytosol | 15.08 | 21.13 |
| TraesCS6A01G162700.2 | Wheat | cytosol, golgi | 14.07 | 21.0 |
| TraesCS7A01G378600.1 | Wheat | cytosol | 13.9 | 20.75 |
| TraesCS7A01G545700.1 | Wheat | cytosol | 13.4 | 20.1 |
| TraesCS4A01G204700.1 | Wheat | cytosol, plastid | 32.33 | 19.18 |
| TraesCS1A01G071300.1 | Wheat | cytosol, plastid | 31.83 | 18.91 |
| TraesCS3A01G421900.1 | Wheat | cytosol | 13.4 | 18.43 |
| TraesCS2A01G086400.1 | Wheat | cytosol | 12.73 | 18.31 |
| TraesCS2A01G475900.1 | Wheat | cytosol | 13.07 | 18.27 |
| TraesCS6A01G177600.1 | Wheat | cytosol | 12.56 | 17.94 |
| TraesCS2A01G471400.1 | Wheat | cytosol | 13.57 | 17.76 |
| TraesCS7A01G372600.1 | Wheat | cytosol | 12.56 | 17.73 |
| TraesCS2A01G090000.1 | Wheat | cytosol | 12.4 | 16.48 |
| TraesCS4A01G115000.1 | Wheat | cytosol | 12.4 | 16.44 |
| TraesCS2A01G457600.3 | Wheat | mitochondrion | 25.29 | 16.18 |
| TraesCS7A01G277100.1 | Wheat | peroxisome | 22.28 | 12.2 |
| TraesCS5A01G301500.1 | Wheat | mitochondrion | 21.11 | 11.71 |
| GSMUA_Achr3P00250_001 | Banana | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.8.60 | MapMan:19.2.4.2.1 | Gene3D:2.40.40.20 | Gene3D:3.10.330.10 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase |
| InterPro:ATPase_AAA_core | InterPro:Asp_de-COase-like_dom_sf | InterPro:CDC48_domain_2-like_sf | InterPro:CDC4_N-term_subdom | InterPro:Cdc48_dom2 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | InterPro:P-loop_NTPase | PFAM:PF00004 | PFAM:PF02359 |
| PFAM:PF02933 | PANTHER:PTHR23077 | PANTHER:PTHR23077:SF122 | SMART:SM00382 | SMART:SM01072 | SMART:SM01073 |
| SUPFAM:SSF50692 | SUPFAM:SSF52540 | SUPFAM:SSF54585 | EnsemblPlantsGene:TraesCS1A01G248500 | EnsemblPlants:TraesCS1A01G248500.1 | TIGR:cd00009 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1A:-:440772545..440780455
Molecular Weight (calculated)
65935.6 Da
IEP (calculated)
5.662
GRAVY (calculated)
-0.195
Length
597 amino acids
Sequence
(BLAST)
(BLAST)
001: MASVAASKKA ANRLVVEEAT TNDDNSVCTL HPATMEKLSI FKGDVVLLKG KRRHNTVCMA LPDDTCEGHK LGIINQQARF NLRVRIADVV SVHLCHDAKF
101: GRRVHIPLDD TVEGIAGNLF DAYLKPYFVD AYRPVHKGDL FLVRGGMRSV EFKGMEIDPA MDYCVVAPDT EIFYEGDPVK REDKERLDGV GYGKVGGMGK
201: PLTLQELVDL PLRHPQIFKS IGVKPPKGIL LYDPPRSGKT LIASVVANET GAFFFLINGP EIMSKMDGES ESNLRKAFEE AEKNAPSIIF IDEIDSIAPN
301: REKTHGEVER RIVSQLLTLM DGMKAHMHVI VMGATNRPNS IDPALRCFGR FDREIDIGVP DEVGRLEVLR IHTKNMKLDK DVNLEVVAKD THGYVGADLA
401: ALYTEAALEC IREKMDMIDL EDDTIDGEIL NSMAVTNDHL KTGLVGTNPS ALRETVVEVP NVSWNDIGGL DSVKRELQET VQYPVEHPEK FKKFGMSPSK
501: GVLFYGPPGC GKTLLAKVIA NKCQTNFISI KVPELLTMWF GESEANVCEI FDKARQSAPC VLFFDEFDSI ATQRGGRVGD AGGAADRVLN QLMKLCT
101: GRRVHIPLDD TVEGIAGNLF DAYLKPYFVD AYRPVHKGDL FLVRGGMRSV EFKGMEIDPA MDYCVVAPDT EIFYEGDPVK REDKERLDGV GYGKVGGMGK
201: PLTLQELVDL PLRHPQIFKS IGVKPPKGIL LYDPPRSGKT LIASVVANET GAFFFLINGP EIMSKMDGES ESNLRKAFEE AEKNAPSIIF IDEIDSIAPN
301: REKTHGEVER RIVSQLLTLM DGMKAHMHVI VMGATNRPNS IDPALRCFGR FDREIDIGVP DEVGRLEVLR IHTKNMKLDK DVNLEVVAKD THGYVGADLA
401: ALYTEAALEC IREKMDMIDL EDDTIDGEIL NSMAVTNDHL KTGLVGTNPS ALRETVVEVP NVSWNDIGGL DSVKRELQET VQYPVEHPEK FKKFGMSPSK
501: GVLFYGPPGC GKTLLAKVIA NKCQTNFISI KVPELLTMWF GESEANVCEI FDKARQSAPC VLFFDEFDSI ATQRGGRVGD AGGAADRVLN QLMKLCT
001: MLETESSVCD NIAGNEKWRA EAEIGGNERA LQALRELIIF PFRYPLEART LGLKWPRGLL LYGPPGTGKT SLVRAVVQEC DAHLIVLSPH SVHRAHAGES
101: EKVLREAFAE ASSHAVSDKP SVIFIDEIDV LCPRRDARRE QDVRIASQLF TLMDSNKPSS SAPRVVVVAS TNRVDAIDPA LRRAGRFDAL VEVSTPNEED
201: RLKILQLYTK KVNLDPSVDL QAIAISCNGY VGADLEALCR EATISASKRS SDSLILTSQD FKIAKSVVGP SINRGITVEI PKVTWDDVGG LKDLKKKLQQ
301: AVEWPIKHSA AFVKMGISPM RGILLHGPPG CSKTTLAKAA ANAAQASFFS LSCAELFSMY VGEGEALLRN TFQRARLASP SIIFFDEADV VACKRGDESS
401: SNSSTVGERL LSTLLTEMDG LEEAKVNKSS
101: EKVLREAFAE ASSHAVSDKP SVIFIDEIDV LCPRRDARRE QDVRIASQLF TLMDSNKPSS SAPRVVVVAS TNRVDAIDPA LRRAGRFDAL VEVSTPNEED
201: RLKILQLYTK KVNLDPSVDL QAIAISCNGY VGADLEALCR EATISASKRS SDSLILTSQD FKIAKSVVGP SINRGITVEI PKVTWDDVGG LKDLKKKLQQ
301: AVEWPIKHSA AFVKMGISPM RGILLHGPPG CSKTTLAKAA ANAAQASFFS LSCAELFSMY VGEGEALLRN TFQRARLASP SIIFFDEADV VACKRGDESS
401: SNSSTVGERL LSTLLTEMDG LEEAKVNKSS
Arabidopsis Description
CDC48BCell division control protein 48 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPR1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.