CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 4
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99061	Soybean	cytosol	23.2	93.5
KRH22853	Soybean	cytosol, endoplasmic reticulum, mitochondrion	93.18	93.06
KRH26511	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	93.18	93.06
KRH25081	Soybean	cytosol, endoplasmic reticulum, mitochondrion	82.13	91.44
KRG96011	Soybean	endoplasmic reticulum, mitochondrion, nucleus	91.44	91.21
KRH32530	Soybean	endoplasmic reticulum, mitochondrion	91.94	91.14
KRH67721	Soybean	endoplasmic reticulum, nucleus	91.32	91.09
KRH19916	Soybean	endoplasmic reticulum, mitochondrion	91.44	90.88
KRG94277	Soybean	cytosol	23.33	90.82
Zm00001d027707_P001	Maize	cytosol, plasma membrane	89.83	89.72
Zm00001d048409_P001	Maize	cytosol	89.45	89.68
Os03t0151800-02	Rice	cytosol, extracellular, nucleus, plasma membrane, plastid	89.45	89.12
Zm00001d032859_P006	Maize	plasma membrane	88.71	88.27
Zm00001d014124_P001	Maize	cytosol, plasma membrane	88.46	87.92
KRH63585	Soybean	endoplasmic reticulum	87.72	86.86
KRH54357	Soybean	cytosol, endoplasmic reticulum, mitochondrion	87.72	86.86
TraesCSU01G001000.1	Wheat	cytosol	84.49	84.81
TraesCS3B01G154400.1	Wheat	cytosol	80.89	82.74
HORVU0Hr1G006340.1	Barley	cytosol	80.52	82.36
TraesCS1B01G419200.1	Wheat	cytosol	80.52	82.26
TraesCS3A01G144500.1	Wheat	cytosol	54.22	81.99
TraesCS3B01G171400.1	Wheat	cytosol	73.95	81.98
TraesCS3B01G171200.1	Wheat	cytosol	80.15	81.98
TraesCS3A01G145100.1	Wheat	cytosol	80.15	81.88
TraesCS3B01G172000.1	Wheat	cytosol	79.03	81.25
TraesCS1B01G259200.1	Wheat	cytosol	79.53	81.24
TraesCS3B01G172100.1	Wheat	cytosol	79.53	81.14
EER95525	Sorghum	cytosol	78.41	81.03
KXG40206	Sorghum	cytosol	78.54	80.95
Os10t0442600-01	Rice	cytosol, nucleus, plasma membrane, plastid	19.48	80.51
HORVU3Hr1G029450.1	Barley	cytosol	80.52	80.32
TraesCS3A01G145000.1	Wheat	cytosol	69.35	80.32
HORVU3Hr1G029440.1	Barley	cytosol	80.52	79.73
TraesCS3B01G171300.1	Wheat	cytosol	71.71	79.29
TraesCS5B01G323100.1	Wheat	cytosol	56.82	78.83
TraesCS1A01G248500.1	Wheat	cytosol	58.06	78.39
KRH45638	Soybean	cytosol	27.54	69.16
Zm00001d032117_P001	Maize	cytosol	27.17	68.44
KRH70928	Soybean	cytosol	27.42	36.47
KRH44049	Soybean	nucleus	32.88	33.5
KRH51796	Soybean	cytosol	16.38	33.17
KRH61120	Soybean	endoplasmic reticulum	16.38	33.17
KRH05868	Soybean	cytosol, nucleus	16.38	33.08
KRH15139	Soybean	cytosol, endoplasmic reticulum, nucleus	16.38	33.08
KRG97280	Soybean	cytosol, nucleus	17.37	32.86
KRH06311	Soybean	cytosol	17.37	32.86
KRH47728	Soybean	cytosol, nucleus	17.37	32.86
KRH69005	Soybean	nucleus	17.37	32.86
KRG98107	Soybean	cytosol	15.51	29.62
KRH19693	Soybean	cytosol	16.25	29.57
KRH32292	Soybean	cytosol, nucleus	16.25	29.57
KRH30673	Soybean	cytosol, nucleus	15.51	29.55
KRH30674	Soybean	cytosol, nucleus	15.14	29.54
KRH67524	Soybean	nucleus	16.25	29.37
KRG95799	Soybean	cytosol, nucleus	16.25	29.37
KRG92899	Soybean	cytosol, nucleus	15.38	29.31
KRH33891	Soybean	endoplasmic reticulum, nucleus	15.38	29.31
KRH06953	Soybean	cytosol	9.8	29.26
KRH46990	Soybean	nucleus	15.01	28.95
KRH44668	Soybean	cytosol, mitochondrion, nucleus	15.01	28.95
KRH68501	Soybean	nucleus	14.76	28.0
KRH45565	Soybean	endoplasmic reticulum	6.95	27.45
KRH10420	Soybean	mitochondrion	16.75	27.27
KRH51488	Soybean	mitochondrion	14.14	26.95
KRH66707	Soybean	plastid	33.87	26.1
KRG96790	Soybean	mitochondrion	10.67	25.9
KRG95054	Soybean	plastid	23.2	24.25
KRG96401	Soybean	mitochondrion	27.42	24.05
KRH68139	Soybean	cytosol	18.61	22.39
KRH00031	Soybean	plastid	9.31	21.74
KRH50491	Soybean	cytosol	26.18	18.67

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100805946	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300
InterPro:AAA+_ATPase	InterPro:AAA_ATPase_CDC48	EMBL:ACUP02007039	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf
InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom	InterPro:Cdc48_dom2	EnsemblPlantsGene:GLYMA_11G194900	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	UniProt:K7LQC6	ProteinID:KRH30599.1
ProteinID:KRH30600.1	EnsemblPlants:KRH30601	ProteinID:KRH30601	ProteinID:KRH30601.1	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF02359	PFAM:PF02933	ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF122	SMART:SM00382
SMART:SM01072	SMART:SM01073	SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585	TIGRFAMs:TIGR01243
UniParc:UPI000233C3CA	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:26852593..26859430

Molecular Weight (calculated)

89524.5 Da

IEP (calculated)

5.008

GRAVY (calculated)

-0.395

Length

806 amino acids

Sequence
(BLAST)

001: MSHQAESSDS KSWKKDFSTA ILERKKSPNR LVVDEAVNDD NSVVAMHPQT LEKLQLFRGD TILIKGKKRK DTVCIALADD NCEESKIRMN KVVRSNLRVR
101: LGDVVSVHAC PDVKYGKRVH ILPIDDTIEG VTGNLFDAYL KPYFLEAYRP VRKGDLFLVR GGMRGVEFKV IETDPGEYCV VAPDTEIFCE GEPVKREDEE
201: RLDEVGYDDV GGVRKQMAQI RELVELPLRH PQLFKSIGVK PPKGILLYGP PGSGKTLIAR AVANETGAFF FCINGPEIMS KLAGESESNL RKAFEEAEKN
301: APSIIFIDEI DSIAPKREKT HGEVERRIVS QLLTLMDGLK SRAHVIVIGA TNRPNSIDPA LRRFGRFDRE IDIGVPDEVG RLEVLRVHTK NMKLSDNVDL
401: ERIAKDTHGY VGADLAALCT EAALQCIREK MDVIDLEDES IDAEVLNSMA VSNEHFHIAL GTSNPSALRE TVVEVPNVSW EDIGGLENVK RELQETVQYP
501: VEHPEKFEKF GMSPSKGVLF YGPPGCGKTL LAKAIANECQ ANFISVKGPE LLTMWFGESE ANVREIFDKA RQSAPCVLFF DELDSIATQR GSSGGDAGGA
601: ADRVLNQLLT EMDGMNAKKT VFIIGATNRP DIIDSALLRP GRLDQLIYIP LPDQESRYQI FKACMKKSPV SKDVNLGALA EYTKGFSGAD ITEICQRACK
701: YAIRENIEKD IEHERKRREN PEAMDEDMEG EDVSEIKAAH FEESMKYARR SVSDADIRKY QAFAQTLQQS RGFGSDFNFP AAVSRTAGSE PFATSAGGAD
801: EDDLYS

Best Arabidopsis Sequence Match ( AT3G01610.1 )
(BLAST)

001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE

Arabidopsis Description

CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.