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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 1
  • cytosol 4
  • nucleus 1
  • mitochondrion 3
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 endoplasmic reticulum: 27224218
mitochondrion: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6D01G149500.1 Wheat cytosol 60.28 70.83
GSMUA_Achr4P03720_001 Banana cytosol 65.72 69.85
KRH51796 Soybean cytosol 65.72 69.85
KRH61120 Soybean endoplasmic reticulum 65.72 69.85
VIT_03s0038g04350.t01 Wine grape cytosol 65.48 69.42
Solyc01g109940.2.1 Tomato nucleus 65.25 69.35
GSMUA_AchrUn_... Banana cytosol 65.72 69.33
PGSC0003DMT400079514 Potato cytosol 65.01 69.1
KRH05868 Soybean cytosol, nucleus 65.01 68.92
KRH15139 Soybean cytosol, endoplasmic reticulum, nucleus 64.78 68.67
Zm00001d046539_P002 Maize cytosol, mitochondrion 64.3 68.34
EER88627 Sorghum cytosol 64.07 68.09
TraesCS7A01G378600.1 Wheat cytosol 64.3 68.0
TraesCS7B01G280400.1 Wheat cytosol, unclear 64.3 68.0
TraesCS7D01G375500.1 Wheat cytosol 64.3 68.0
Os06t0607800-01 Rice nucleus 64.3 67.83
Os02t0199900-01 Rice nucleus, plasma membrane 64.07 67.75
Zm00001d053649_P002 Maize cytosol, mitochondrion 64.07 67.75
EES06471 Sorghum cytosol 64.07 67.75
GSMUA_Achr7P17620_001 Banana cytosol 65.48 67.56
TraesCS6A01G162700.2 Wheat cytosol, golgi 63.83 67.5
TraesCS6B01G188500.1 Wheat cytosol 63.83 67.5
Zm00001d015788_P001 Maize plasma membrane 63.83 67.5
Solyc10g054040.1.1 Tomato cytosol, unclear 62.65 66.42
HORVU6Hr1G032570.5 Barley cytosol 63.36 65.53
HORVU7Hr1G119300.13 Barley cytosol 59.1 62.19
HORVU7Hr1G090380.3 Barley cytosol 64.07 62.16
TraesCS7D01G532000.1 Wheat cytosol 58.39 62.06
TraesCS7B01G468900.1 Wheat cytosol 57.92 61.56
TraesCS7A01G545700.1 Wheat cytosol 57.45 61.06
KRH00031 Soybean plastid 38.77 47.54
KRH44668 Soybean cytosol, mitochondrion, nucleus 37.35 37.8
KRH46990 Soybean nucleus 37.35 37.8
KRH45565 Soybean endoplasmic reticulum 17.73 36.76
KRH06953 Soybean cytosol 22.93 35.93
KRH19693 Soybean cytosol 37.35 35.67
KRH32292 Soybean cytosol, nucleus 37.35 35.67
KRH06311 Soybean cytosol 35.46 35.21
KRH69005 Soybean nucleus 35.46 35.21
KRG97280 Soybean cytosol, nucleus 35.46 35.21
KRH47728 Soybean cytosol, nucleus 35.46 35.21
KRH67524 Soybean nucleus 37.12 35.2
KRG95799 Soybean cytosol, nucleus 37.12 35.2
KRH30674 Soybean cytosol, nucleus 32.62 33.41
KRG98107 Soybean cytosol 33.33 33.41
KRH30673 Soybean cytosol, nucleus 33.33 33.33
KRG92899 Soybean cytosol, nucleus 32.62 32.62
KRH33891 Soybean endoplasmic reticulum, nucleus 32.62 32.62
KRH68501 Soybean nucleus 31.68 31.53
KRG96790 Soybean mitochondrion 24.59 31.33
KRG99061 Soybean cytosol 12.77 27.0
KRG94277 Soybean cytosol 11.11 22.71
KRH70928 Soybean cytosol 25.06 17.49
KRH45638 Soybean cytosol 13.24 17.45
KRH25081 Soybean cytosol, endoplasmic reticulum, mitochondrion 25.06 14.64
KRG96011 Soybean endoplasmic reticulum, mitochondrion, nucleus 27.19 14.23
KRH67721 Soybean endoplasmic reticulum, nucleus 27.19 14.23
KRH19916 Soybean endoplasmic reticulum, mitochondrion 27.19 14.18
KRH32530 Soybean endoplasmic reticulum, mitochondrion 27.19 14.15
KRH30601 Soybean cytosol 26.95 14.14
KRH22853 Soybean cytosol, endoplasmic reticulum, mitochondrion 26.95 14.13
KRH63585 Soybean endoplasmic reticulum 26.95 14.0
KRH54357 Soybean cytosol, endoplasmic reticulum, mitochondrion 26.95 14.0
KRH26511 Soybean cytosol, endoplasmic reticulum, mitochondrion, nucleus 26.71 14.0
KRH10420 Soybean mitochondrion 15.6 13.33
KRH44049 Soybean nucleus 24.82 13.27
KRG96401 Soybean mitochondrion 23.64 10.88
KRH66707 Soybean plastid 26.24 10.61
KRH68139 Soybean cytosol 14.89 9.4
KRH50491 Soybean cytosol 21.99 8.23
KRG95054 Soybean plastid 14.42 7.91
Protein Annotations
Gene3D:1.10.8.60MapMan:19.2.6.2.1.4Gene3D:2.40.50.140Gene3D:3.40.50.300InterPro:AAA+_ATPaseEMBL:ACUP02003377
InterPro:ATPase_AAA_CSInterPro:ATPase_AAA_coreEnsemblPlantsGene:GLYMA_06G009700GO:GO:0000166GO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0005737GO:GO:0005829GO:GO:0006139GO:GO:0006950GO:GO:0008150
GO:GO:0008152GO:GO:0008540GO:GO:0009056GO:GO:0009058GO:GO:0009987GO:GO:0016043
GO:GO:0016787GO:GO:0017025GO:GO:0019538GO:GO:0030433GO:GO:0031595GO:GO:0031597
GO:GO:0036402GO:GO:0045899GO:GO:1901800UniProt:I1K743EnsemblPlants:KRH51488ProteinID:KRH51488
ProteinID:KRH51488.1InterPro:P-loop_NTPasePFAM:PF00004ScanProsite:PS00674InterPro:PSMC6PANTHER:PTHR23073
PANTHER:PTHR23073:SF59SMART:SM00382SUPFAM:SSF52540UniParc:UPI0002963575::
Description
hypothetical protein
Coordinates
chr6:+:762125..764892
Molecular Weight (calculated)
48070.7 Da
IEP (calculated)
10.146
GRAVY (calculated)
-0.353
Length
423 amino acids
Sequence
(BLAST)
001: MDEILRRLSA VAEYRRKFYL CQIIHYRIRA AKRVLRDAKK EYATTQSLRR GGQLVTLVEG PYNDHNQRFI VKSSSGADRH IVGIHSKVEK EKLVPGTRVS
101: LDRTTMTIMR ILPPQVDPFV YNMIHEDPIN ANYSALRELT EQIREHGESI ELPPELNLKV MWDTGHVKYA AVGGLSDQIR QLRESIELPL TNPELFLRVG
201: IGMKLPKGVL LYGPPGTGKT LLAKAISCNV DAKFLKVVSS TIIHKSIGES ARLIREMFKY ARNHQPCIIF MDEIDAIAGR RSSNRKGSDR EIQRTLKELL
301: NQLDGLNHLE KVKIIMATNR LDVLDPALLR HGRIDRKIEI TLPNRKSRME IFKIHAEGVT KRGEIDYEAV VKLAEGFNGA DLRNVCTEAG LFAIRAERDY
401: VIHGDFIKGV RKLNEAKKLE SSP
Best Arabidopsis Sequence Match ( AT5G43010.1 )
(BLAST)
001: MTDVDESVRR RTAAVSEYRK KLLQHKELES RVRTARENLR GAKKEFNKTE DDLKSLQSVG QIIGEVLRPL DNERLIVKAS SGPRYVVGCR SKVDKEKLTS
101: GTRVVLDMTT LTIMRALPRE VDPVVYNMLH EDPGNISYSA VGGLGDQIRE LRESIELPLM NPELFLRVGI KPPKGVLLYG PPGTGKTLLA RAIASNIDAN
201: FLKVVSSAII DKYIGESARL IREMFNYARE HQPCIIFMDE IDAIGGRRFS EGTSADREIQ RTLMELLNQL DGFDNLGKVK MIMATNRPDV LDPALLRPGR
301: LDRKIEIPLP NEQSRMDILK IHAAGIAKHG EIDYEAIVKL AEGFNGADLR NICTEAGMFA IRAERDYVIH EDFMKAVRKL SEAKKLESSS HYNADFGKE
Arabidopsis Description
RPT4A26S proteasome regulatory subunit 10B homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9SEI3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.