Factsheet for PGSC0003DMT400079514

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g109940.2.1	Tomato	nucleus	99.75	99.75
VIT_03s0038g04350.t01	Wine grape	cytosol	94.97	94.74
GSMUA_AchrUn_...	Banana	cytosol	94.22	93.52
TraesCS6D01G149500.1	Wheat	cytosol	83.42	92.22
EES06471	Sorghum	cytosol	91.96	91.5
Zm00001d053649_P002	Maize	cytosol, mitochondrion	91.96	91.5
GSMUA_Achr7P17620_001	Banana	cytosol	94.22	91.46
Zm00001d015788_P001	Maize	plasma membrane	91.71	91.25
TraesCS6B01G188500.1	Wheat	cytosol	91.71	91.25
TraesCS6A01G162700.2	Wheat	cytosol, golgi	91.71	91.25
Os02t0199900-01	Rice	nucleus, plasma membrane	91.46	91.0
GSMUA_Achr4P03720_001	Banana	cytosol	90.95	90.95
EER88627	Sorghum	cytosol	90.45	90.45
Zm00001d046539_P002	Maize	cytosol, mitochondrion	90.45	90.45
TraesCS7D01G375500.1	Wheat	cytosol	90.7	90.25
TraesCS7B01G280400.1	Wheat	cytosol, unclear	90.7	90.25
TraesCS7A01G378600.1	Wheat	cytosol	90.7	90.25
Os06t0607800-01	Rice	nucleus	90.7	90.02
HORVU6Hr1G032570.5	Barley	cytosol	88.94	86.55
HORVU7Hr1G090380.3	Barley	cytosol	90.7	82.8
TraesCS7D01G532000.1	Wheat	cytosol	77.14	77.14
HORVU7Hr1G119300.13	Barley	cytosol	77.64	76.87
TraesCS7A01G545700.1	Wheat	cytosol	76.63	76.63
TraesCS7B01G468900.1	Wheat	cytosol	75.88	75.88
KRH51488	Soybean	mitochondrion	69.1	65.01
PGSC0003DMT400006190	Potato	cytosol	35.68	43.56
PGSC0003DMT400023656	Potato	cytosol	41.71	38.78
PGSC0003DMT400012446	Potato	cytosol	41.71	38.69
PGSC0003DMT400051744	Potato	cytosol	42.21	37.84
PGSC0003DMT400040872	Potato	cytosol	42.21	37.84
PGSC0003DMT400053010	Potato	cytosol	39.2	37.77
PGSC0003DMT400078301	Potato	cytosol	38.94	37.44
PGSC0003DMT400063574	Potato	cytosol	38.94	36.64
PGSC0003DMT400038718	Potato	cytosol	39.2	36.03
PGSC0003DMT400018483	Potato	cytosol	28.39	27.56
PGSC0003DMT400072919	Potato	cytosol	27.89	18.17
PGSC0003DMT400031321	Potato	cytosol	34.42	17.02
PGSC0003DMT400050662	Potato	cytosol	34.42	17.02
PGSC0003DMT400055513	Potato	cytosol	34.42	16.98
PGSC0003DMT400027096	Potato	cytosol	34.42	16.96
PGSC0003DMT400046624	Potato	cytosol	34.17	16.79
PGSC0003DMT400015455	Potato	mitochondrion	29.9	15.6
PGSC0003DMT400046254	Potato	cytosol	30.65	14.84
PGSC0003DMT400013679	Potato	cytosol	27.39	11.72

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:102589500	MapMan:19.2.6.2.1.4	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300
InterPro:AAA+_ATPase	EMBL:AB061249	ProteinID:ABA40428	ProteinID:ABA40428.1	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core
ProteinID:BAC23035	ProteinID:BAC23035.1	ncoils:Coil	EMBL:DQ191627	GO:GO:0000166	GO:GO:0000502
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0016787
GO:GO:0019538	GO:GO:0030163	RefSeq:NP_001274944.1	InterPro:P-loop_NTPase	PFAM:PF00004	EnsemblPlantsGene:PGSC0003DMG400030960
PGSC:PGSC0003DMG400030960	EnsemblPlants:PGSC0003DMT400079514	ScanProsite:PS00674	PANTHER:PTHR23073	PANTHER:PTHR23073:SF58	UniProt:Q8H9D4
SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01242	UniParc:UPI00000AD0A8	:	:

Description

26S proteasome AAA-ATPase subunit RPT4a [Source:PGSC_GENE;Acc:PGSC0003DMG400030960]

Coordinates

chr1:-:86309556..86315959

Molecular Weight (calculated)

44721.3 Da

IEP (calculated)

8.415

GRAVY (calculated)

-0.358

Length

398 amino acids

Sequence
(BLAST)

001: MATEEDAVRR RTALADYRKK LLQHKELDAR VRTVRENLRA TKKEYAKTED DLKSLQSVGQ IIGEVLRPLD NERLIVKASS GPRYVVGCRS KVDKEKLTSG
101: TRVVLDMTTL TIMRALPREV DPVVYNMLHE DPGNISYSAV GGLSDQIREL RESIELPLMN PELFLRVGIK PPKGVLLYGP PGTGKTLLAR AIASNIDANF
201: LKVVSSAIID KYIGESARLI REMFNYARDH QPCIIFMDEI DAIGGRRFSE GTSADREIQR TLMELLNQLD GFDQLGKVKM IMATNRPDVL DPALLRPGRL
301: DRKIEIPLPN EQSRMEILKI HAAGIAKHGE IDYEAAIKLA EGFNGADMRN VCTEAGMFAI RAERDYVIHE DFMKAVRKLN EAKKLESSAH YSADFGKE

Best Arabidopsis Sequence Match ( AT1G45000.1 )
(BLAST)

001: MSDGDDAARR RTAAVTDYRK KLLHHKELES RVRTARENLR AAKKEFNKTE DDLKSLQSVG QIIGEVLRPL DNERLIVKAS SGPRYVVGCR SKVDKEKLTS
101: GTRVVLDMTT LTIMRALPRE VDPVVYNMLH EDPGNISYSA VGGLGDQIRE LRESIELPLM NPELFLRVGI KPPKGVLLYG PPGTGKTLLA RAIASNIDAN
201: FLKVVSSAII DKYIGESARL IREMFNYARE HQPCIIFMDE IDAIGGRRFS EGTSADREIQ RTLMELLNQL DGFDQLGKVK MIMATNRPDV LDPALLRPGR
301: LDRKIEIPLP NEQSRMEILK IHASGIAKHG EIDYEAIVKL GEGFNGADLR NICTEAGMFA IRAERDYVIH EDFMKAVRKL SEAKKLESSS HYNADFGKE

Arabidopsis Description

RPT4B26S protease regulatory subunit S10B homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9MAK9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.