Factsheet for PGSC0003DMT400046624

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g112590.2.1	Tomato	cytosol, nucleus, plastid	97.65	95.19
VIT_17s0000g08890.t01	Wine grape	cytosol	90.62	90.17
KRH54357	Soybean	cytosol, endoplasmic reticulum, mitochondrion	89.26	88.82
KRH63585	Soybean	endoplasmic reticulum	89.14	88.7
PGSC0003DMT400050662	Potato	cytosol	87.65	88.2
PGSC0003DMT400027096	Potato	cytosol	87.78	88.0
PGSC0003DMT400055513	Potato	cytosol	87.65	87.98
GSMUA_Achr7P04540_001	Banana	cytosol	85.8	87.97
PGSC0003DMT400031321	Potato	cytosol	87.41	87.95
PGSC0003DMT400072919	Potato	cytosol	28.89	38.3
PGSC0003DMT400018483	Potato	cytosol	19.01	37.56
PGSC0003DMT400079514	Potato	cytosol	16.79	34.17
PGSC0003DMT400006190	Potato	cytosol	13.58	33.74
PGSC0003DMT400012446	Potato	cytosol	17.16	32.4
PGSC0003DMT400023656	Potato	cytosol	17.04	32.24
PGSC0003DMT400015455	Potato	mitochondrion	30.0	31.85
PGSC0003DMT400046254	Potato	cytosol	31.6	31.14
PGSC0003DMT400053010	Potato	cytosol	15.43	30.27
PGSC0003DMT400063574	Potato	cytosol	15.68	30.02
PGSC0003DMT400078301	Potato	cytosol	15.31	29.95
PGSC0003DMT400051744	Potato	cytosol	15.8	28.83
PGSC0003DMT400040872	Potato	cytosol	15.8	28.83
PGSC0003DMT400038718	Potato	cytosol	13.95	26.1
PGSC0003DMT400013679	Potato	cytosol	27.53	23.98

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:102600114	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300
InterPro:AAA+_ATPase	InterPro:AAA_ATPase_CDC48	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	InterPro:CDC48_domain_2-like_sf
InterPro:CDC4_N-term_subdom	InterPro:Cdc48_dom2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	UniProt:M1BJD2	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02359
PFAM:PF02933	EnsemblPlantsGene:PGSC0003DMG400018104	PGSC:PGSC0003DMG400018104	EnsemblPlants:PGSC0003DMT400046624	ScanProsite:PS00674	PANTHER:PTHR23077
PANTHER:PTHR23077:SF92	SMART:SM00382	SMART:SM01072	SMART:SM01073	SUPFAM:SSF50692	SUPFAM:SSF52540
SUPFAM:SSF54585	TIGRFAMs:TIGR01243	UniParc:UPI000295EEEF	RefSeq:XP_006344438.1	RefSeq:XP_015162871.1	SEG:seg

Description

Cell division cycle protein 48 [Source:PGSC_GENE;Acc:PGSC0003DMG400018104]

Coordinates

chr3:-:52383744..52387983

Molecular Weight (calculated)

90060.3 Da

IEP (calculated)

4.976

GRAVY (calculated)

-0.396

Length

810 amino acids

Sequence
(BLAST)

001: MADPNSSTSD SKNNKKDFAT AILERKKSPN RLIVDEAIND DNSVVSMHPA KMEELQLFRG DTVLLKGKKR KDTVCVVLAD EQCEEHKIRL NKVVRANLRI
101: RLGDVVSVHQ CPDVKYAKRV HILPIDDTIE GMTGNLFDAY LKPYFLESYR PVRKGDLFVV RGGMRSVEFK VVETEPGEYC VVAPDTEIFC EGEPIKREDE
201: ERLNEVGYDD VGGMRKQMAQ IRELVELPLR HPQLFKSIGV KPPKGILLYG PPGSGKTLIG RAVANETGAF FFLINGPEIM SKLAGESEGN LRKAFEEAEK
301: NAPSIIFIDE LDSIAPKREK THGEVERRIV SQLLTLMDGL KSRSHVVVMG ATNRPNSIDP ALRRFGRFDR EIDIGVPDEI GRLEILRIHT KNMKLDDNVD
401: LERVARDTHG YVGADLAALC TEAALQCIRE KMDVIDLEDE TIDAEVLNSM AVTNEHFQAA LGASNPSALR ETVVEVPNTS WEDIGGLENV KRELQETVQY
501: PVEHPEKFEK FGMSPSKGVL FYGPPGCGKT LLAKAIANEC QANFISVKGP ELLTMWFGES EANVREIFDK ARQSAPCVLF FDELDSIATQ RGNSVGDAGG
601: AADRVLNQLL TEMDGMTAKK TVFIIGATNR PDIIDPALLR PGRLDQLIYI PLPDEASRLQ IFKACLRKSP VAKDVDLSAL SRYTRGFSGA DITEICQRAC
701: KYAIRENIEK DIERERKRSV NPEAMDEDDT DEVAEIKAAH FEESMKYARR SVSDADIRKY QAFAQTLQQS RGLGTEFKFA EHAANATPTG ATADPFASVN
801: AAGDEDDLYS

Best Arabidopsis Sequence Match ( AT5G03340.1 )
(BLAST)

001: MSNEPESSDS KTKKDFSTAI LERKKSPNRL VVDEAINDDN SVVSLHPTTM EKLQLFRGDT ILIKGKKRKD TVCIALADET CEEPKIRMNK VVRSNLRVRL
101: GDVISVHQCP DVKYGKRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDEVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV SNEHFHTALG NSNPSALRET VVEVPNVSWE DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG NSAGDAGGAA
601: DRVLNQLLTE MDGMNAKKTV FIIGATNRPD IIDSALLRPG RLDQLIYIPL PDEDSRLNIF KACLRKSPVA KDVDVTALAK YTQGFSGADI TEICQRACKY
701: AIRENIEKDI ENERRRSQNP EAMEEDMVDD EVSEIRAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFDS TAGVGRTTGV AAADPFATSA
801: AAADDDDLYS

Arabidopsis Description

CDC48ECell division control protein 48 homolog E [Source:UniProtKB/Swiss-Prot;Acc:Q9LZF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.