Factsheet for PGSC0003DMT400013679

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
peroxisome 1
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g008730.2.1	Tomato	cytosol	98.06	98.17
VIT_07s0104g01610.t01	Wine grape	cytosol	67.2	66.63
KRG96401	Soybean	mitochondrion	64.41	65.18
KRH68139	Soybean	cytosol	46.34	64.33
CDY37450	Canola	mitochondrion	63.23	63.57
CDY32490	Canola	mitochondrion	62.69	62.89
AT1G03000.1	Thale cress	mitochondrion	63.44	62.7
CDX89923	Canola	cytosol	51.18	62.3
GSMUA_Achr6P20030_001	Banana	cytosol	59.57	57.35
Os04t0617600-01	Rice	cytosol	52.58	52.02
TraesCS2D01G458300.3	Wheat	mitochondrion	52.15	51.98
TraesCS2B01G480000.3	Wheat	mitochondrion	52.04	51.88
TraesCS2A01G457600.3	Wheat	mitochondrion	51.94	51.77
EES12865	Sorghum	mitochondrion	51.61	51.72
HORVU2Hr1G104530.9	Barley	cytosol	49.46	50.38
Zm00001d002462_P010	Maize	mitochondrion	49.35	43.18
PGSC0003DMT400018483	Potato	cytosol	14.73	33.41
Bra032565.1-P	Field mustard	mitochondrion	62.26	31.06
PGSC0003DMT400006190	Potato	cytosol	10.65	30.37
PGSC0003DMT400050662	Potato	cytosol	24.84	28.7
PGSC0003DMT400031321	Potato	cytosol	24.84	28.7
PGSC0003DMT400055513	Potato	cytosol	24.52	28.25
PGSC0003DMT400027096	Potato	cytosol	24.41	28.09
PGSC0003DMT400023656	Potato	cytosol	12.9	28.04
PGSC0003DMT400012446	Potato	cytosol	12.8	27.74
PGSC0003DMT400046624	Potato	cytosol	23.98	27.53
PGSC0003DMT400072919	Potato	cytosol	18.06	27.5
PGSC0003DMT400079514	Potato	cytosol	11.72	27.39
PGSC0003DMT400053010	Potato	cytosol	11.61	26.15
PGSC0003DMT400040872	Potato	cytosol	12.47	26.13
PGSC0003DMT400078301	Potato	cytosol	11.61	26.09
PGSC0003DMT400051744	Potato	cytosol	12.26	25.68
PGSC0003DMT400063574	Potato	cytosol	11.29	24.82
PGSC0003DMT400015455	Potato	mitochondrion	19.68	23.98
PGSC0003DMT400038718	Potato	cytosol	10.75	23.09
PGSC0003DMT400046254	Potato	cytosol	19.89	22.51

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:102592792	MapMan:23.4.1.5.1.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006629	GO:GO:0006635	GO:GO:0006810	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043	GO:GO:0016558	UniProt:M1A371
InterPro:P-loop_NTPase	PFAM:PF00004	EnsemblPlantsGene:PGSC0003DMG400005347	PGSC:PGSC0003DMG400005347	EnsemblPlants:PGSC0003DMT400013679	ScanProsite:PS00674
PANTHER:PTHR23077	PANTHER:PTHR23077:SF9	SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI000295762B	RefSeq:XP_006366676.1
SEG:seg	:	:	:	:	:

Description

Peroxisome assembly factor-2 [Source:PGSC_GENE;Acc:PGSC0003DMG400005347]

Coordinates

chr6:+:1197819..1207274

Molecular Weight (calculated)

102014.0 Da

IEP (calculated)

6.787

GRAVY (calculated)

-0.162

Length

930 amino acids

Sequence
(BLAST)

001: MVEKRKPLIL SSTKNLLNSL LNSETQTQIS LLSTVQLRAG ILQVSKDASK ISNPKFVNFD DSALVGLTTS QLRRLCITSG SLVLIKNVNT SQQRIGQVVV
101: LDPPSSDKVL SECSSSLSHS SLTTFLLPLH SYPDCHSIKP DGEVAYLSPI LAFNLNLHLS CLRSMIHQGK EALSPIFEAK SDNIVSEKDN ALITLGLEPL
201: DQLPKYATHL RASFVKIPEC GTVDSVKKDS SIEAEDRQEL IDMELNKYFG VDRFLSRGDL FSVCINWNCK LALCIPCSQK KQSDGSELIY FKVVGMEPSE
301: EPVLKVNRTR TALVLGGNVP SAVPPDFLIP RPQGSLPLQV STVKTLASIL IPPLCPSALS SKFRVVVLLH GLTGCGKRTV VKFVARQLGL HVVEYNCQSI
401: FANSDRKTSA ALAEAFSMAR RYSPTILLLR HFEAFRNLAS NEGSPHDQVG MNLEVASVIK EFTEPIAEDE EIYSEGKSNA HDQVKVAQPV NRHPVLLVAA
501: ADSPEGLPPT IRRCFSHEIS MDPLNEEQRK EMLTQSLQHV SELLPNISLE DLVKDLVGQT SGFMPRDLRA LVADVGANLV HSHGSQDVKV VHGDLKEGSH
601: ESKPIENDGS HDSAKSLSKE DVMKSLERSK KRNATALGTP KVPNVKWEDV GGLEDVKKSI LDTVQLPLLH KDLFSSGLRK RSGVLFYGPP GTGKTLLAKA
701: VATECSLNFL SVKGPELINM YIGESEKNVR DIFQKARSAR PCVIFFDELD SLAPARGASG DSGGVMDRVV SQMLAEIDGL NDSTQDLFII GASNRPDLID
801: PALLRPGRFD KLLYVGVNSE ASYRERVLKA LTRKFKLKED ISLLSIAKRC PPNFTGADMY ALCADAWFHA AKRKALASDS DSTGSDEMDV SIIVEYEDFL
901: KVLGEISPSL SMAELKKYEL LREQFEGSSR

Best Arabidopsis Sequence Match ( AT1G03000.1 )
(BLAST)

001: MVERRNPLVL SSTRSTLRSV LNSSQPSSAD GDRVLNKDGD LLRGNARLSA GILRWRKDGE NVSDAKLDSL DDSALVGLST QLLKRLSINS GSLVVVKNIE
101: IGIQRVAQVV VLDPPKTTLE DASLTQVPVS DSLHTMLVFP TYDLMGQQLL DQEVAYLSPM LAFNLSLHIS CLKSLVHRGN GVLEKYFEAK CDEEFIGKSA
201: EDGSKIGLDL EPVSQVPGYA SHLRVSFVKI PECGTIPSLK VNSSFEAEER QGLIDSALQK YFGTDRQLSR GDIFRIYIDW NCGSSICNPC SQRLCSESDD
301: YIYFKVIAME PSNERFLRVN HSQTALVLGG TVSSGLPPDL LVYRSKVPMP LQEETVNILA SVLSPPLCPS ALASKLRVAV LLHGIPGCGK RTVVKYVARR
401: LGLHVVEFSC HSLLASSERK TSTALAQTFN MARRYSPTIL LLRHFDVFKN LGSQDGSLGD RVGVSFEIAS VIRELTEPVS NGDSSMEEKS NSNFSENEVG
501: KFRGHQVLLI ASAESTEGIS PTIRRCFSHE IRMGSLNDEQ RSEMLSQSLQ GVSQFLNISS DEFMKGLVGQ TSGFLPRDLQ ALVADAGANL YISQESETKK
601: INSLSDDLHG VDIHQASQID NSTEKLTAKE DFTKALDRSK KRNASALGAP KVPNVKWDDV GGLEDVKTSI LDTVQLPLLH KDLFSSGLRK RSGVLLYGPP
701: GTGKTLLAKA VATECSLNFL SVKGPELINM YIGESEKNVR DIFEKARSAR PCVIFFDELD SLAPARGASG DSGGVMDRVV SQMLAEIDGL SDSSQDLFII
801: GASNRPDLID PALLRPGRFD KLLYVGVNAD ASYRERVLKA LTRKFKLSED VSLYSVAKKC PSTFTGADMY ALCADAWFQA AKRKVSKSDS GDMPTEEDDP
901: DSVVVEYVDF IKAMDQLSPS LSITELKKYE MLRDQFQGRS S

Arabidopsis Description

PEX6Peroxisome biogenesis protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RY16]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.