Factsheet for Zm00001d002462_P010

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033491_P001	Maize	cytosol, plasma membrane, plastid	22.3	93.68
EES12865	Sorghum	mitochondrion	79.49	91.06
TraesCS2A01G457600.3	Wheat	mitochondrion	69.33	78.99
TraesCS2D01G458300.3	Wheat	mitochondrion	69.05	78.67
TraesCS2B01G480000.3	Wheat	mitochondrion	68.86	78.46
Os04t0617600-01	Rice	cytosol	67.64	76.49
HORVU2Hr1G104530.9	Barley	cytosol	65.57	76.34
GSMUA_Achr6P20030_001	Banana	cytosol	49.01	53.93
KRG96401	Soybean	mitochondrion	44.87	51.9
CDY32490	Canola	mitochondrion	44.97	51.56
CDY37450	Canola	mitochondrion	44.59	51.24
AT1G03000.1	Thale cress	mitochondrion	45.06	50.9
VIT_07s0104g01610.t01	Wine grape	cytosol	44.31	50.21
Solyc06g008730.2.1	Tomato	cytosol	43.37	49.62
CDX89923	Canola	cytosol	35.65	49.61
KRH68139	Soybean	cytosol	31.14	49.4
PGSC0003DMT400013679	Potato	cytosol	43.18	49.35
Zm00001d032117_P001	Maize	cytosol	11.19	37.19
Zm00001d045163_P001	Maize	mitochondrion	5.64	34.09
Zm00001d025776_P002	Maize	cytosol	16.09	30.11
Zm00001d009592_P001	Maize	cytosol	7.15	29.01
Zm00001d046539_P002	Maize	cytosol, mitochondrion	10.63	28.39
Zm00001d015788_P001	Maize	plasma membrane	10.63	28.25
Zm00001d053649_P002	Maize	cytosol, mitochondrion	10.63	28.25
Zm00001d027707_P001	Maize	cytosol, plasma membrane	21.07	27.76
Zm00001d048409_P001	Maize	cytosol	20.88	27.61
Zm00001d032859_P006	Maize	plasma membrane	20.79	27.28
Zm00001d014124_P001	Maize	cytosol, plasma membrane	20.79	27.25
Zm00001d028801_P001	Maize	cytosol, extracellular	11.29	26.91
Zm00001d018309_P003	Maize	cytosol	10.72	26.76
Zm00001d050303_P001	Maize	cytosol	19.85	26.71
Zm00001d022573_P001	Maize	cytosol, extracellular, plasma membrane	11.19	26.62
Zm00001d053616_P002	Maize	cytosol	10.54	26.54
Zm00001d016439_P003	Maize	cytosol, extracellular, plasma membrane	10.54	26.54
Zm00001d050616_P002	Maize	plastid	10.72	26.27
Zm00001d035913_P002	Maize	cytosol, mitochondrion	17.78	25.78
Zm00001d045566_P001	Maize	cytosol, mitochondrion	18.53	25.65
Zm00001d007215_P001	Maize	cytosol	11.19	25.65
Bra032565.1-P	Field mustard	mitochondrion	44.97	25.64
Zm00001d037481_P003	Maize	cytosol, extracellular, plasma membrane	10.35	25.58
Zm00001d022096_P002	Maize	mitochondrion	17.78	24.97
Zm00001d052078_P003	Maize	cytosol	10.72	24.95
Zm00001d018409_P007	Maize	cytosol	10.07	23.88
Zm00001d049140_P006	Maize	cytosol, plastid	18.91	20.0
Zm00001d015886_P002	Maize	cytosol	9.03	17.71
Zm00001d002717_P001	Maize	mitochondrion	6.59	17.16
Zm00001d049974_P004	Maize	peroxisome	17.5	16.68
Zm00001d027244_P001	Maize	cytosol	5.74	16.67
Zm00001d053999_P001	Maize	cytosol	6.4	16.55

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100382258	Gene3D:2.40.30.10	MapMan:23.4.1.5.1.2	Gene3D:3.40.50.300	Gene3D:4.10.960.10
UniProt:A0A1D6E101	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0006629
GO:GO:0006635	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016558	GO:GO:0019538	ProteinID:ONM14411.1	ProteinID:ONM14467.1
ProteinID:ONM14468.1	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF00297	ScanProsite:PS00674	PANTHER:PTHR23077
PANTHER:PTHR23077:SF9	InterPro:Ribosomal_L3	SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI0008446A08	EnsemblPlantsGene:Zm00001d002462
EnsemblPlants:Zm00001d002462_P010	EnsemblPlants:Zm00001d002462_T010	SEG:seg	:	:	:

Description

Peroxisome biogenesis protein 6

Coordinates

chr2:+:13294099..13307750

Molecular Weight (calculated)

114989.0 Da

IEP (calculated)

8.376

GRAVY (calculated)

-0.162

Length

1063 amino acids

Sequence
(BLAST)

0001: MVEMRQRRKP LVLASTQALL DSLPGDRPPP PPQEPVRLKA GVLRFPSGGG GAEFGELASF VGIPAPTLRR LAVVTGTPVL VKNTDNNVGR IVKAVLFGNP
0101: SLDKSCSEHT DQVVSGHAMG FLPCRTFPAT GFTSMDEDVG YVSPLLAFNL GLPVSCLKLL IQREGQPFKF CSRAEEMDAT ASSGSDLSLH LDLLPCPQVP
0201: KYALHLRVSV VRIPDCGVLA SLKINSSFGG SEYQDMVDQA LNEYFKFDRF LARGDVFGIQ NSWKCGSSCC LACNKQDNKL NPRNMIYFKV TGMEPSDEPI
0301: LRVNCNETAL VLGGAASAAI PPYSFFASSG NSVPLHSEVV EHLASVIAPA LCPSDILPKI KFSTFLYGPP GCGKRTVVRH VANHLGLHVV ECSCHDLMTS
0401: SESGAPTALA TTFKEAQKYS PCIILLRHFD AIGNASSNEG PQSEQSGIAS NIESVIKQYI GQRWVAKDSL PGKDVNGSSY LVEPECVSSL QIILVATADS
0501: SEGMQQSIRR CFRYEIDMKT MNEEQRNKLI SETLQGIPKV ADESICDKFL KDLAAQTSGF MPRDILALVA DAGVSFAHKI AAGNDSKAIS KHTEVLPESS
0601: SATQNEEHHF SKEDIMSSLE RAKKRNRAAL GTPKVPNVKW EDVGGLEDVK KVILDTIQLP LMYKHLFSSK LRKRSGVLLY GPPGTGKTLL AKAVATECSL
0701: NFLSVKGPEL INMYVGESEK NVRDIFEKAR SARPCVIFFD ELDSLAPARG SSADSGGVMD RVVSQLLVEI DGLSDNSQDL FIIGATNRPD LLDSALLRPG
0801: RFDKLLYVGV NTEASYRERI LKAQTRKYKL HKNVSLLSVA QRCPPNFTGA DIYALCADAW FHAAKRSVET FETDPSRSND ASAEEVIVEI DDFITCQQRC
0901: LLVRARQVGR CEQNPYVIVS SGAILRGSAH GRGLGGLAGS FVPPNGFTCS ASAQPAPPPL PLALPSGKEG GRRGCRTVNS STRGTVPLAS SPGSDPLPPP
1001: RKGFCKNCFS GLSSPSLKSF PRDDPKKPCH LTAFLGYKAG MTHIVVRSRS LAPSSTRRKL VRL

Best Arabidopsis Sequence Match ( AT1G03000.1 )
(BLAST)

001: MVERRNPLVL SSTRSTLRSV LNSSQPSSAD GDRVLNKDGD LLRGNARLSA GILRWRKDGE NVSDAKLDSL DDSALVGLST QLLKRLSINS GSLVVVKNIE
101: IGIQRVAQVV VLDPPKTTLE DASLTQVPVS DSLHTMLVFP TYDLMGQQLL DQEVAYLSPM LAFNLSLHIS CLKSLVHRGN GVLEKYFEAK CDEEFIGKSA
201: EDGSKIGLDL EPVSQVPGYA SHLRVSFVKI PECGTIPSLK VNSSFEAEER QGLIDSALQK YFGTDRQLSR GDIFRIYIDW NCGSSICNPC SQRLCSESDD
301: YIYFKVIAME PSNERFLRVN HSQTALVLGG TVSSGLPPDL LVYRSKVPMP LQEETVNILA SVLSPPLCPS ALASKLRVAV LLHGIPGCGK RTVVKYVARR
401: LGLHVVEFSC HSLLASSERK TSTALAQTFN MARRYSPTIL LLRHFDVFKN LGSQDGSLGD RVGVSFEIAS VIRELTEPVS NGDSSMEEKS NSNFSENEVG
501: KFRGHQVLLI ASAESTEGIS PTIRRCFSHE IRMGSLNDEQ RSEMLSQSLQ GVSQFLNISS DEFMKGLVGQ TSGFLPRDLQ ALVADAGANL YISQESETKK
601: INSLSDDLHG VDIHQASQID NSTEKLTAKE DFTKALDRSK KRNASALGAP KVPNVKWDDV GGLEDVKTSI LDTVQLPLLH KDLFSSGLRK RSGVLLYGPP
701: GTGKTLLAKA VATECSLNFL SVKGPELINM YIGESEKNVR DIFEKARSAR PCVIFFDELD SLAPARGASG DSGGVMDRVV SQMLAEIDGL SDSSQDLFII
801: GASNRPDLID PALLRPGRFD KLLYVGVNAD ASYRERVLKA LTRKFKLSED VSLYSVAKKC PSTFTGADMY ALCADAWFQA AKRKVSKSDS GDMPTEEDDP
901: DSVVVEYVDF IKAMDQLSPS LSITELKKYE MLRDQFQGRS S

Arabidopsis Description

PEX6Peroxisome biogenesis protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RY16]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.