Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER99961 | Sorghum | cytosol | 95.69 | 99.33 |
| Zm00001d022573_P001 | Maize | cytosol, extracellular, plasma membrane | 95.47 | 99.11 |
| Os07t0691800-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 94.18 | 97.54 |
| TraesCS2A01G090000.1 | Wheat | cytosol | 93.1 | 96.21 |
| TraesCS2D01G087900.1 | Wheat | cytosol, golgi | 92.89 | 95.99 |
| TraesCS2B01G105700.1 | Wheat | cytosol | 92.89 | 95.99 |
| GSMUA_Achr4P05850_001 | Banana | cytosol | 86.64 | 94.81 |
| Zm00001d028801_P001 | Maize | cytosol, extracellular | 90.95 | 94.62 |
| GSMUA_Achr4P05840_001 | Banana | cytosol | 84.91 | 93.59 |
| KRG95799 | Soybean | cytosol, nucleus | 89.44 | 93.05 |
| KRH32292 | Soybean | cytosol, nucleus | 88.79 | 93.0 |
| KRH19693 | Soybean | cytosol | 88.79 | 93.0 |
| KRH67524 | Soybean | nucleus | 89.22 | 92.83 |
| AT4G29040.1 | Thale cress | cytosol | 88.36 | 92.55 |
| AT2G20140.1 | Thale cress | cytosol | 88.15 | 92.33 |
| CDX97472 | Canola | cytosol | 88.15 | 91.91 |
| CDY35245 | Canola | cytosol | 87.72 | 91.87 |
| Bra011079.1-P | Field mustard | cytosol | 87.72 | 91.87 |
| Bra010342.1-P | Field mustard | cytosol | 87.93 | 91.69 |
| VIT_07s0005g05160.t01 | Wine grape | cytosol | 87.93 | 91.69 |
| CDY14224 | Canola | cytosol | 87.93 | 91.69 |
| CDY06847 | Canola | cytosol | 87.5 | 91.65 |
| CDX92914 | Canola | cytosol, extracellular | 87.5 | 91.65 |
| Solyc06g083620.2.1 | Tomato | nucleus, plastid | 87.28 | 91.22 |
| PGSC0003DMT400040872 | Potato | cytosol | 87.07 | 90.99 |
| PGSC0003DMT400051744 | Potato | cytosol | 86.85 | 90.77 |
| HORVU2Hr1G014770.2 | Barley | cytosol, plastid | 84.91 | 89.34 |
| HORVU3Hr1G095530.3 | Barley | mitochondrion, plastid | 43.32 | 80.08 |
| HORVU1Hr1G091080.1 | Barley | mitochondrion, plastid | 43.1 | 79.68 |
| Bra024165.1-P | Field mustard | cytosol | 53.23 | 76.47 |
| CDY59958 | Canola | cytosol | 59.91 | 76.37 |
| Zm00001d045163_P001 | Maize | mitochondrion | 19.61 | 51.7 |
| Zm00001d050616_P002 | Maize | plastid | 41.38 | 44.24 |
| Zm00001d037481_P003 | Maize | cytosol, extracellular, plasma membrane | 39.01 | 42.09 |
| Zm00001d046539_P002 | Maize | cytosol, mitochondrion | 35.99 | 41.96 |
| Zm00001d016439_P003 | Maize | cytosol, extracellular, plasma membrane | 37.93 | 41.71 |
| Zm00001d053616_P002 | Maize | cytosol | 37.93 | 41.71 |
| Zm00001d015788_P001 | Maize | plasma membrane | 35.13 | 40.75 |
| Zm00001d053649_P002 | Maize | cytosol, mitochondrion | 34.91 | 40.5 |
| Zm00001d018409_P007 | Maize | cytosol | 38.15 | 39.51 |
| Zm00001d018309_P003 | Maize | cytosol | 35.99 | 39.2 |
| Zm00001d052078_P003 | Maize | cytosol | 35.99 | 36.54 |
| Zm00001d015886_P002 | Maize | cytosol | 33.84 | 28.97 |
| Zm00001d032117_P001 | Maize | cytosol | 18.1 | 26.25 |
| Zm00001d025776_P002 | Maize | cytosol | 26.94 | 22.01 |
| Zm00001d009592_P001 | Maize | cytosol | 10.78 | 19.08 |
| Zm00001d035913_P002 | Maize | cytosol, mitochondrion | 25.86 | 16.37 |
| Zm00001d027707_P001 | Maize | cytosol, plasma membrane | 28.02 | 16.11 |
| Zm00001d048409_P001 | Maize | cytosol | 27.8 | 16.04 |
| Zm00001d045566_P001 | Maize | cytosol, mitochondrion | 26.51 | 16.02 |
| Zm00001d032859_P006 | Maize | plasma membrane | 27.8 | 15.93 |
| Zm00001d050303_P001 | Maize | cytosol | 26.94 | 15.82 |
| Zm00001d014124_P001 | Maize | cytosol, plasma membrane | 27.59 | 15.78 |
| Zm00001d022096_P002 | Maize | mitochondrion | 24.57 | 15.06 |
| Zm00001d049140_P006 | Maize | cytosol, plastid | 27.37 | 12.64 |
| Zm00001d002462_P010 | Maize | mitochondrion | 25.65 | 11.19 |
| Zm00001d049974_P004 | Maize | peroxisome | 21.98 | 9.15 |
| Zm00001d002717_P001 | Maize | mitochondrion | 7.11 | 8.09 |
| Zm00001d053999_P001 | Maize | cytosol | 6.68 | 7.54 |
| Zm00001d027244_P001 | Maize | cytosol | 4.74 | 6.01 |
| Zm00001d033491_P001 | Maize | cytosol, plasma membrane, plastid | 1.94 | 3.56 |
Protein Annotations
| Gene3D:1.10.8.60 | MapMan:19.2.6.2.1.2 | Gene3D:2.40.50.140 | InterPro:26S_Psome_P45-like | InterPro:26S_subunit_4 | Gene3D:3.40.50.300 |
| UniProt:A0A1D6F4V7 | InterPro:AAA+_ATPase | InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | GO:GO:0000166 | GO:GO:0000502 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0019538 | GO:GO:0030163 | GO:GO:0036402 | GO:GO:1901800 | ProteinID:ONM26347.1 |
| InterPro:P-loop_NTPase | PFAM:PF00004 | ScanProsite:PS00674 | PANTHER:PTHR23073 | PANTHER:PTHR23073:SF42 | SMART:SM00382 |
| SUPFAM:SSF52540 | TIGRFAMs:TIGR01242 | UniParc:UPI000842FE21 | EnsemblPlantsGene:Zm00001d007215 | EnsemblPlants:Zm00001d007215_P001 | EnsemblPlants:Zm00001d007215_T001 |
| SEG:seg | : | : | : | : | : |
Description
26S proteasome regulatory subunit 4 homolog A
Coordinates
chr2:-:224898494..224901979
Molecular Weight (calculated)
51492.2 Da
IEP (calculated)
6.075
GRAVY (calculated)
-0.397
Length
464 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQGTPGGMG KQGGAGDRKP GDGGDKKDKK FEPPAAPSRV GRKQRKQKGA EAAARLPNVA PLSKCRLRLL KLERVKDYLL MEEEFVAAQE RLRPQEDKAE
101: EDRSKVDDLR GTPMSVGSLE EIIDESHAIV SSSVGPEYYV SILSFVDKDQ LEPGCSILMH NKVLSVVGIL QDEVDPMVSV MKVEKAPLES YADIGGLDSQ
201: IQEIKEAVEL PLTHPELYED IGIRPPKGVI LYGEPGTGKT LLAKFSNSMY LGSDYLKLFL QAVANSTSAT FLRVVGSELI QKYLGDGPKL VRELFRVADE
301: LSPSIVFIDE IDAVGTKRYD AHSGGEREIQ RTMLELLNQL DGFDSRGDVK VILATNRIES LDPALLRPGR IDRKIEFPLP DIKTRRRIFQ IHTSKMTLAD
401: DVNLEEFVMT KDEFSGADIK AICTEAGLLA LRERRMKVTH ADFKKAKEKV MYKKKEGVPD GLYM
101: EDRSKVDDLR GTPMSVGSLE EIIDESHAIV SSSVGPEYYV SILSFVDKDQ LEPGCSILMH NKVLSVVGIL QDEVDPMVSV MKVEKAPLES YADIGGLDSQ
201: IQEIKEAVEL PLTHPELYED IGIRPPKGVI LYGEPGTGKT LLAKFSNSMY LGSDYLKLFL QAVANSTSAT FLRVVGSELI QKYLGDGPKL VRELFRVADE
301: LSPSIVFIDE IDAVGTKRYD AHSGGEREIQ RTMLELLNQL DGFDSRGDVK VILATNRIES LDPALLRPGR IDRKIEFPLP DIKTRRRIFQ IHTSKMTLAD
401: DVNLEEFVMT KDEFSGADIK AICTEAGLLA LRERRMKVTH ADFKKAKEKV MYKKKEGVPD GLYM
001: MGQGPSGGLN RQGDRKPDGG DKKEKKFEPA APPARVGRKQ RKQKGPEAAA RLPTVTPSTK CKLRLLKLER IKDYLLMEEE FVANQERLKP QEEKAEEDRS
101: KVDDLRGTPM SVGNLEELID ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE KAPLESYADI GGLEAQIQEI
201: KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA
301: HSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD IKTRRRIFQI HTSKMTLSED VNLEEFVMTK DEFSGADIKA
401: ICTEAGLLAL RERRMKVTHP DFKKAKEKVM FKKKEGVPEG LYM
101: KVDDLRGTPM SVGNLEELID ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE KAPLESYADI GGLEAQIQEI
201: KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA
301: HSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD IKTRRRIFQI HTSKMTLSED VNLEEFVMTK DEFSGADIKA
401: ICTEAGLLAL RERRMKVTHP DFKKAKEKVM FKKKEGVPEG LYM
Arabidopsis Description
RPT2ARPT2a [Source:UniProtKB/TrEMBL;Acc:A0A178V3V3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.