Factsheet for Bra024165.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plasma membrane 1
nucleus 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001152.1-P
Bra002279.1-P
Bra002662.1-P
Bra003428.1-P
Bra005560.1-P
Bra006369.1-P
Bra006529.1-P
Bra006530.1-P
Bra006775.1-P
Bra007565.1-P
Bra009693.1-P
Bra010366.1-P
Bra010849.1-P
Bra011030.1-P
Bra013157.1-P
Bra013838.1-P
Bra014468.1-P
Bra015170.1-P
Bra015799.1-P
Bra017345.1-P
Bra017408.1-P
Bra017890.1-P
Bra018084.1-P
Bra019524.1-P
Bra020079.1-P
Bra020378.1-P
Bra021810.1-P
Bra022899.1-P
Bra023815.1-P
Bra023851.1-P
Bra024200.1-P
Bra025066.1-P
Bra025167.1-P
Bra026492.1-P
Bra027456.1-P
Bra027705.1-P
Bra027934.1-P
Bra029375.1-P
Bra030921.1-P
Bra030922.1-P
Bra031328.1-P
Bra032291.1-P
Bra032422.1-P
Bra033773.1-P
Bra035332.1-P
Bra035381.1-P
Bra035416.1-P
Bra036488.1-P
Bra038162.1-P
Bra038919.1-P
Bra039431.1-P
Bra039688.1-P
Bra040214.1-P
Bra040569.1-P
Bra040831.1-P
Bra040915.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29040.1	Bra010849.1-P	AT1G29150.1	14623884
AT4G29040.1	Bra032291.1-P	AT1G29150.1	14623884
AT4G29040.1	Bra030922.1-P	AT1G53750.1	14623884
AT4G29040.1	Bra039688.1-P	AT1G53750.1	14623884
AT4G29040.1	Bra040569.1-P	AT1G53750.1	14623884
AT4G29040.1	Bra030921.1-P	AT1G53850.1	14623884
AT4G29040.1	Bra027934.1-P	AT1G56450.1	14623884
AT4G29040.1	Bra038162.1-P	AT1G56450.1	14623884
AT4G29040.1	Bra038919.1-P	AT1G56450.1	14623884
AT4G29040.1	Bra017890.1-P	AT1G59900.1	24846764
AT4G29040.1	Bra035416.1-P	AT1G59900.1	24846764
AT4G29040.1	Bra027705.1-P	AT1G64520.1	14623884
AT4G29040.1	Bra040915.1-P	AT1G64520.1	14623884
AT4G29040.1	Bra015799.1-P	AT1G75990.1	14623884
AT4G29040.1	Bra013157.1-P	AT2G05840.1	14623884
AT4G29040.1	Bra015170.1-P	AT2G05840.1	14623884
AT4G29040.1	Bra036488.1-P	AT2G20580.1	14623884
AT4G29040.1	Bra005560.1-P	AT2G32730.1	14623884
AT4G29040.1	Bra021810.1-P	AT2G32730.1	14623884
AT4G29040.1	Bra022899.1-P	AT2G32730.1	14623884
AT4G29040.1	Bra001152.1-P	AT3G05530.1	14623884
AT4G29040.1	Bra039431.1-P	AT3G05530.1	14623884
AT4G29040.1	Bra040214.1-P	AT3G05530.1	14623884
AT4G29040.1	Bra023851.1-P	AT3G22110.1	14623884
AT4G29040.1	Bra031328.1-P	AT3G22110.1	14623884
AT4G29040.1	Bra023815.1-P	AT3G22630.1	14623884
AT4G29040.1	Bra040831.1-P	AT3G22630.1	14623884
AT4G29040.1	Bra017345.1-P	AT3G25860.1	24846764
AT4G29040.1	Bra025167.1-P	AT3G25860.1	24846764
AT4G29040.1	Bra018084.1-P	AT3G48100.1	18642946
AT4G29040.1	Bra019524.1-P	AT3G48100.1	18642946
AT4G29040.1	Bra033773.1-P	AT3G48100.1	18642946
AT4G29040.1	Bra003428.1-P	AT3G60820.1	14623884
AT4G29040.1	Bra007565.1-P	AT3G60820.1	14623884
AT4G29040.1	Bra014468.1-P	AT3G60820.1	14623884
AT4G29040.1	Bra013838.1-P	AT4G24820.1	14623884
AT4G29040.1	Bra010366.1-P	AT4G28470.1	14623884
AT4G29040.1	Bra011030.1-P	AT4G28470.1	14623884
AT4G29040.1	Bra024200.1-P	AT4G28470.1	14623884
AT4G29040.1	Bra006369.1-P	AT5G05780.1	14623884
AT4G29040.1	Bra017408.1-P	AT5G05780.1	14623884
AT4G29040.1	Bra032422.1-P	AT5G05780.1	14623884
AT4G29040.1	Bra002279.1-P	AT5G19990.1	14623884
AT4G29040.1	Bra006529.1-P	AT5G19990.1	14623884
AT4G29040.1	Bra006530.1-P	AT5G19990.1	14623884
AT4G29040.1	Bra020079.1-P	AT5G19990.1	14623884
AT4G29040.1	Bra002279.1-P	AT5G20000.1	14623884
AT4G29040.1	Bra006529.1-P	AT5G20000.1	14623884
AT4G29040.1	Bra006530.1-P	AT5G20000.1	14623884
AT4G29040.1	Bra020079.1-P	AT5G20000.1	14623884
AT4G29040.1	Bra009693.1-P	AT5G23540.1	14623884
AT4G29040.1	Bra026492.1-P	AT5G23540.1	14623884
AT4G29040.1	Bra029375.1-P	AT5G23540.1	14623884
AT4G29040.1	Bra035381.1-P	AT5G35750.1	18642946
AT4G29040.1	Bra027456.1-P	AT5G42790.1	14623884
AT4G29040.1	Bra035332.1-P	AT5G42790.1	14623884
AT4G29040.1	Bra025066.1-P	AT5G45620.1	14623884
AT4G29040.1	Bra002662.1-P	AT5G58290.1	14623884
AT4G29040.1	Bra006775.1-P	AT5G58290.1	14623884
AT4G29040.1	Bra020378.1-P	AT5G58290.1	14623884

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY59958	Canola	cytosol	100.0	88.74
GSMUA_Achr4P05840_001	Banana	cytosol	75.54	57.96
GSMUA_Achr4P05850_001	Banana	cytosol	75.54	57.55
AT4G29040.1	Thale cress	cytosol	78.33	57.11
Bra011079.1-P	Field mustard	cytosol	78.33	57.11
AT2G20140.1	Thale cress	cytosol	77.71	56.66
Bra010342.1-P	Field mustard	cytosol	78.02	56.63
Zm00001d022573_P001	Maize	cytosol, extracellular, plasma membrane	76.78	55.48
Os07t0691800-01	Rice	cytosol, nucleus, plasma membrane, plastid	76.78	55.36
HORVU2Hr1G014770.2	Barley	cytosol, plastid	75.54	55.33
KRH32292	Soybean	cytosol, nucleus	75.85	55.3
KRH19693	Soybean	cytosol	75.85	55.3
EER99961	Sorghum	cytosol	76.47	55.26
Os03t0298400-01	Rice	plasma membrane	76.78	55.11
VIT_07s0005g05160.t01	Wine grape	cytosol	75.85	55.06
TraesCS2D01G087900.1	Wheat	cytosol, golgi	76.47	55.01
TraesCS2B01G105700.1	Wheat	cytosol	76.47	55.01
KRH67524	Soybean	nucleus	75.85	54.93
TraesCS4B01G189200.1	Wheat	cytosol	76.47	54.89
HORVU4Hr1G055060.1	Barley	cytosol	76.47	54.89
TraesCS4A01G115000.1	Wheat	cytosol	76.47	54.89
TraesCS4D01G190600.1	Wheat	cytosol, golgi	76.47	54.89
TraesCS2A01G090000.1	Wheat	cytosol	76.16	54.79
KRG95799	Soybean	cytosol, nucleus	75.54	54.71
Zm00001d028801_P001	Maize	cytosol, extracellular	75.54	54.71
PGSC0003DMT400040872	Potato	cytosol	74.61	54.28
PGSC0003DMT400051744	Potato	cytosol	74.61	54.28
Solyc06g083620.2.1	Tomato	nucleus, plastid	74.3	54.05
Zm00001d007215_P001	Maize	cytosol	76.47	53.23
HORVU3Hr1G095530.3	Barley	mitochondrion, plastid	32.82	42.23
HORVU1Hr1G091080.1	Barley	mitochondrion, plastid	32.51	41.83
Bra005023.1-P	Field mustard	cytosol	26.01	35.15
Bra006775.1-P	Field mustard	cytosol	35.6	29.41
Bra002662.1-P	Field mustard	cytosol	36.53	29.21
Bra020378.1-P	Field mustard	cytosol	36.53	29.21
Bra033655.1-P	Field mustard	cytosol	34.67	28.07
Bra035338.1-P	Field mustard	cytosol	34.67	28.07
Bra006529.1-P	Field mustard	cytosol	34.98	26.97
Bra002279.1-P	Field mustard	cytosol	34.37	26.49
Bra040214.1-P	Field mustard	cytosol	33.75	25.71
Bra039431.1-P	Field mustard	cytosol	33.75	25.71
Bra001152.1-P	Field mustard	cytosol	33.75	25.71
Bra030922.1-P	Field mustard	cytosol	31.89	24.18
Bra039688.1-P	Field mustard	cytosol	31.89	24.18
Bra040569.1-P	Field mustard	cytosol	31.89	23.79
Bra008198.1-P	Field mustard	cytosol	33.44	17.2
Bra020079.1-P	Field mustard	cytosol	35.29	15.81
Bra017378.1-P	Field mustard	cytosol	24.15	12.94
Bra003123.1-P	Field mustard	cytosol	24.77	9.88
Bra022833.1-P	Field mustard	cytosol	22.29	9.69
Bra006978.1-P	Field mustard	cytosol	24.15	9.62
Bra001297.1-P	Field mustard	cytosol	23.84	9.52
Bra029795.1-P	Field mustard	cytosol	23.84	9.52
Bra034089.1-P	Field mustard	cytosol	23.84	9.51
Bra000999.1-P	Field mustard	cytosol, mitochondrion	21.67	8.4
Bra007262.1-P	Field mustard	plastid	24.46	8.06
Bra005733.1-P	Field mustard	cytosol	24.15	7.07
Bra009342.1-P	Field mustard	cytosol	22.91	6.6
Bra032565.1-P	Field mustard	mitochondrion	26.63	4.61
Bra006530.1-P	Field mustard	cytosol, nucleus, plastid	0.31	0.45

Protein Annotations

Gene3D:1.10.8.60	Gene3D:2.40.50.140	InterPro:26S_subunit_4	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	EnsemblPlantsGene:Bra024165	EnsemblPlants:Bra024165.1	EnsemblPlants:Bra024165.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0036402	GO:GO:1901800
UniProt:M4E5W1	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674	PANTHER:PTHR23073	PANTHER:PTHR23073:SF42
SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI0002540CB1	SEG:seg	:	:

Description

AT4G29040 (E=7e-047) RPT2a | RPT2a (regulatory particle AAA-ATPase 2a); ATPase

Coordinates

chrA03:+:27163812..27167355

Molecular Weight (calculated)

35567.7 Da

IEP (calculated)

4.860

GRAVY (calculated)

-0.349

Length

323 amino acids

Sequence
(BLAST)

001: MQAPAAQNGA DQGLSLDGGR VRGEPGEAEE DRSKVDDLRG TPMSVGNLEE LIDENHAIVS SSVGPEYYVG ILSFVDKDQL EPGCSILMHT KVLSVVGILH
101: DEVDPMVSVM KVEKAPLEPP KGVILYGEPG TGKTLLPKKY LRDGPKLVRE LFRVADDLSP SIVFIDEIDA VGMMPNSGDV KVILATNRIE SLDPALLRPG
201: RIDRKIEFPL PDIKTRRRIF QIHTSKMTLS EDVNLEEFVM TKDEFSGADI KAICTEAGLR MKVTHPDFKK AKEKVMFKKK EGIPEGSSSS SSSTRATNPF
301: VLAFRKSEEI AAFLDKREEE DAE

Best Arabidopsis Sequence Match ( AT4G29040.1 )
(BLAST)

001: MGQGPSGGLN RQGDRKPDGG DKKEKKFEPA APPARVGRKQ RKQKGPEAAA RLPTVTPSTK CKLRLLKLER IKDYLLMEEE FVANQERLKP QEEKAEEDRS
101: KVDDLRGTPM SVGNLEELID ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE KAPLESYADI GGLEAQIQEI
201: KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA
301: HSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD IKTRRRIFQI HTSKMTLSED VNLEEFVMTK DEFSGADIKA
401: ICTEAGLLAL RERRMKVTHP DFKKAKEKVM FKKKEGVPEG LYM

Arabidopsis Description

RPT2ARPT2a [Source:UniProtKB/TrEMBL;Acc:A0A178V3V3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.