Factsheet for Bra005733.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11249	Canola	cytosol	71.74	99.25
AT5G03340.1	Thale cress	cytosol	70.47	96.05
Bra001297.1-P	Field mustard	cytosol	69.66	95.06
Bra034089.1-P	Field mustard	cytosol	69.57	94.81
Bra029795.1-P	Field mustard	cytosol	69.29	94.56
VIT_08s0040g01480.t01	Wine grape	cytosol	68.03	93.18
PGSC0003DMT400027096	Potato	cytosol	67.57	92.33
Solyc10g084050.1.1	Tomato	cytosol, nucleus, plastid, unclear	67.48	92.2
Solyc06g074980.2.1	Tomato	nucleus	67.12	92.05
PGSC0003DMT400031321	Potato	cytosol	67.12	92.05
Zm00001d048409_P001	Maize	cytosol	66.94	91.92
GSMUA_Achr5P15500_001	Banana	cytosol, plasma membrane	67.3	91.84
Zm00001d027707_P001	Maize	cytosol, plasma membrane	67.03	91.7
PGSC0003DMT400055513	Potato	cytosol	66.94	91.57
Bra003123.1-P	Field mustard	cytosol	67.12	91.48
Zm00001d014124_P001	Maize	cytosol, plasma membrane	67.12	91.37
Zm00001d032859_P006	Maize	plasma membrane	67.03	91.36
Solyc11g069720.1.1	Tomato	cytosol, extracellular, nucleus, plastid	66.49	91.18
Os03t0151800-02	Rice	cytosol, extracellular, nucleus, plasma membrane, plastid	66.76	91.1
GSMUA_Achr4P26800_001	Banana	cytosol	66.76	91.1
PGSC0003DMT400050662	Potato	cytosol	66.39	91.06
Bra006978.1-P	Field mustard	cytosol	66.76	90.88
Solyc09g008070.2.1	Tomato	cytosol, unclear	66.12	90.35
GSMUA_Achr9P23550_001	Banana	mitochondrion	64.31	88.09
TraesCSU01G001000.1	Wheat	cytosol	63.5	87.3
Os10t0442600-01	Rice	cytosol, nucleus, plasma membrane, plastid	15.4	87.18
VIT_06s0061g00340.t01	Wine grape	cytosol	58.79	84.84
TraesCS3B01G154400.1	Wheat	cytosol	59.6	83.5
HORVU0Hr1G006340.1	Barley	cytosol	59.33	83.12
TraesCS1B01G419200.1	Wheat	cytosol	59.33	83.02
TraesCS3A01G144500.1	Wheat	cytosol	40.04	82.93
TraesCS3B01G171200.1	Wheat	cytosol	59.15	82.87
TraesCS3B01G171400.1	Wheat	cytosol	54.53	82.81
TraesCS3A01G145100.1	Wheat	cytosol	59.06	82.64
TraesCS1B01G259200.1	Wheat	cytosol	59.06	82.64
TraesCS3B01G172100.1	Wheat	cytosol	58.97	82.41
TraesCS3B01G172000.1	Wheat	cytosol	58.51	82.4
EER95525	Sorghum	cytosol	58.15	82.31
KXG40206	Sorghum	cytosol	58.24	82.23
TraesCS3A01G145000.1	Wheat	cytosol	51.72	82.04
HORVU3Hr1G029450.1	Barley	cytosol	59.69	81.56
HORVU3Hr1G029440.1	Barley	cytosol	59.78	81.08
TraesCS3B01G171300.1	Wheat	cytosol	53.08	80.38
TraesCS1A01G248500.1	Wheat	cytosol	42.93	79.4
TraesCS5B01G323100.1	Wheat	cytosol	41.67	79.17
Zm00001d032117_P001	Maize	cytosol	20.02	69.06
Bra005023.1-P	Field mustard	cytosol	9.06	41.84
Bra017378.1-P	Field mustard	cytosol	20.2	36.98
Bra033655.1-P	Field mustard	cytosol	12.5	34.59
Bra035338.1-P	Field mustard	cytosol	12.32	34.09
Bra022833.1-P	Field mustard	cytosol	22.74	33.78
Bra039688.1-P	Field mustard	cytosol	12.5	32.39
Bra030922.1-P	Field mustard	cytosol	12.5	32.39
Bra000999.1-P	Field mustard	cytosol, mitochondrion	23.91	31.69
Bra040569.1-P	Field mustard	cytosol	12.32	31.41
Bra002662.1-P	Field mustard	cytosol	11.05	30.2
Bra020378.1-P	Field mustard	cytosol	11.05	30.2
Bra039431.1-P	Field mustard	cytosol	11.5	29.95
Bra040214.1-P	Field mustard	cytosol	11.5	29.95
Bra001152.1-P	Field mustard	cytosol	11.41	29.72
Bra006775.1-P	Field mustard	cytosol	10.51	29.67
Bra011079.1-P	Field mustard	cytosol	11.59	28.89
Bra006529.1-P	Field mustard	cytosol	10.96	28.88
Bra010342.1-P	Field mustard	cytosol	11.5	28.54
Bra002279.1-P	Field mustard	cytosol	10.78	28.4
Bra007262.1-P	Field mustard	plastid	23.64	26.63
Bra024165.1-P	Field mustard	cytosol	7.07	24.15
Bra008198.1-P	Field mustard	cytosol	11.5	20.22
Bra009342.1-P	Field mustard	cytosol	18.93	18.64
Bra020079.1-P	Field mustard	cytosol	11.32	17.34
Bra032565.1-P	Field mustard	mitochondrion	20.38	12.07
Bra006530.1-P	Field mustard	cytosol, nucleus, plastid	0.63	3.17

Protein Annotations

KEGG:00620+3.6.1.7	KEGG:00627+3.6.1.7	Gene3D:1.10.8.60	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10
Gene3D:3.30.70.100	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:AAA_ATPase_CDC48	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core
InterPro:Acylphosphatase	InterPro:Acylphosphatase-like_dom	InterPro:Acylphosphatase-like_dom_sf	InterPro:Acylphosphatase_CS	InterPro:Asp_de-COase-like_dom_sf	EnsemblPlantsGene:Bra005733
EnsemblPlants:Bra005733.1	EnsemblPlants:Bra005733.1-P	InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom	InterPro:Cdc48_dom2	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003998	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005829
GO:GO:0016787	GO:GO:0030312	InterPro:IPR001792	UniProt:M4CNE5	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF00708	PFAM:PF02359	PFAM:PF02933	PRINTS:PR00112	ScanProsite:PS00151	ScanProsite:PS00674
PFscan:PS51160	PANTHER:PTHR23077	PANTHER:PTHR23077:SF122	SMART:SM00382	SMART:SM01072	SMART:SM01073
SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585	SUPFAM:SSF54975	TIGRFAMs:TIGR01243	UniParc:UPI000253FAB2
SEG:seg	:	:	:	:	:

Description

AT5G03340 (E=0.0) | cell division cycle protein 48, putative / CDC48, putative

Coordinates

chrA03:+:342459..347749

Molecular Weight (calculated)

123037.0 Da

IEP (calculated)

7.177

GRAVY (calculated)

-0.355

Length

1104 amino acids

Sequence
(BLAST)

0001: MVGVVVGKSW VGSLRMRSWL KTRFSGEVMI LKERKRWLLE SRVLGLKTSF GQIQMLTQMA SNVGNRIRFL SLGKLPHVSA SLLRTTQNPR SLSLLLLRPP
0101: VLPLRRRCIS IVHRRRPLLW LRSSPPLSSM SSQAESGAPH QSDSSKTVRM VIKGRVQGVC YRNWTVENAE QLGLKGWVRN RRDGSVEALF SGPVEAVEEM
0201: QQRCRRGPPA AMVTGLEAFP STEEPGTVMH NREISKRMMM AKPVIIGVRM DGWMDGEKLS KESQSCPHTS PMISSKLLND RAFMPRRTTN AIITMPNQPE
0301: SSDSKSKKDF STAILERKKS PNRLVVDEAI NDDNSVVSLH PNAMEKLQLF RGDTILIKGK KRKDTVCIAL ADDSCEEPKI RMNKVVRSNL RVRLGDVVSV
0401: HQCPDVKYGT RVHILPVDDT VEGVTGNLFD AYLKPYFLEA YRPVRKGDLF LVRGGMRSVE FKVIETDPAE YCVVAPDTEI FCEGEPIKRE DEERLDEVGY
0501: DDVGGVRKQM AQIRELVELP LRHPQLFKSI GVKPPKGILL YGPPGSGKTL IARAVANETG AFFFCINGPE IMSKMAGESE SNLRKAFEEA EKNAPSIIFI
0601: DEIDSIAPKR DKTNGEVERR IVSQLLTLMD GLKSRAHVIV MGATNRPNSI DPALRRFGRF DREIDIGVPD EIGRLEVLRI HTKNMKLAED VDLERISKDT
0701: HGYVGADLAA LCTEAALQCI REKMDVIDLE DESIDAEILN SMAVSNEHFH TALGNSNPSA LRETVVEVPN VSWEDIGGLE NVKRELQETV QYPVEHPEKF
0801: EKFGMSPSKG VLFYGPPGCG KTLLAKAIAN ECQANFISVK GPELLTMWFG ESEANVREIF DKARQSAPCV LFFDELDSIA TQRGSSVGDA GGAADRVLNQ
0901: LLTEMDGMNA KKTVFIIGAT NRPDIIDPAL LRPGRLDQLI YIPLPDEESR LSIFKACLRK SPVAKDVEVR ALAKYTQGFS GADITEICQR ACKYAIRENI
1001: EKDIERERRR GENPEAMEED LVDDEVAEIR AAHFEESMKY ARRSVSDADI RKYQAFAQTL QQSRGIGSEF RFDPTAAAGR TTGGAVADPF ATSAAAVDDD
1101: DLYS

Best Arabidopsis Sequence Match ( AT5G03340.1 )
(BLAST)

001: MSNEPESSDS KTKKDFSTAI LERKKSPNRL VVDEAINDDN SVVSLHPTTM EKLQLFRGDT ILIKGKKRKD TVCIALADET CEEPKIRMNK VVRSNLRVRL
101: GDVISVHQCP DVKYGKRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDEVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV SNEHFHTALG NSNPSALRET VVEVPNVSWE DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG NSAGDAGGAA
601: DRVLNQLLTE MDGMNAKKTV FIIGATNRPD IIDSALLRPG RLDQLIYIPL PDEDSRLNIF KACLRKSPVA KDVDVTALAK YTQGFSGADI TEICQRACKY
701: AIRENIEKDI ENERRRSQNP EAMEEDMVDD EVSEIRAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFDS TAGVGRTTGV AAADPFATSA
801: AAADDDDLYS

Arabidopsis Description

CDC48ECell division control protein 48 homolog E [Source:UniProtKB/Swiss-Prot;Acc:Q9LZF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.