Factsheet for Bra022833.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84794	Canola	cytosol	99.06	99.06
Bra000999.1-P	Field mustard	cytosol, mitochondrion	76.58	68.31
AT3G01610.2	Thale cress	nucleus	69.18	61.93
Zm00001d009592_P001	Maize	cytosol	19.11	54.2
Zm00001d035913_P002	Maize	cytosol, mitochondrion	47.91	48.57
VIT_01s0010g02600.t01	Wine grape	cytosol	53.16	47.88
GSMUA_Achr4P03560_001	Banana	mitochondrion	50.34	47.83
EER87717	Sorghum	cytosol	49.66	47.61
PGSC0003DMT400015455	Potato	mitochondrion	48.72	47.44
Zm00001d045566_P001	Maize	cytosol, mitochondrion	48.99	47.4
Os06t0109400-01	Rice	cytosol	48.72	47.01
Zm00001d022096_P002	Maize	mitochondrion	47.78	46.9
Solyc01g068330.2.1	Tomato	nucleus	51.82	46.89
PGSC0003DMT400046254	Potato	cytosol	51.82	46.84
TraesCS5D01G081900.1	Wheat	mitochondrion	46.3	46.3
TraesCS4A01G463300.1	Wheat	mitochondrion	48.59	45.99
TraesCS7D01G023600.1	Wheat	mitochondrion	48.45	45.86
TraesCS7A01G025800.1	Wheat	mitochondrion	48.18	45.61
TraesCS3D01G443600.1	Wheat	mitochondrion	45.09	44.79
TraesCS3B01G487900.1	Wheat	mitochondrion	44.68	44.56
TraesCS3A01G450800.1	Wheat	mitochondrion	44.68	44.5
Zm00001d027244_P001	Maize	cytosol	21.13	42.9
HORVU7Hr1G002880.2	Barley	plastid	45.76	42.45
Zm00001d002717_P001	Maize	mitochondrion	23.15	42.16
Zm00001d053999_P001	Maize	cytosol	21.8	39.42
KRH10420	Soybean	mitochondrion	25.98	38.99
Bra005023.1-P	Field mustard	cytosol	11.71	36.4
Bra017378.1-P	Field mustard	cytosol	27.46	33.83
Bra029795.1-P	Field mustard	cytosol	34.45	31.64
Bra001297.1-P	Field mustard	cytosol	34.32	31.52
Bra034089.1-P	Field mustard	cytosol	34.32	31.48
Bra003123.1-P	Field mustard	cytosol	34.05	31.23
Bra006978.1-P	Field mustard	cytosol	33.92	31.07
Bra033655.1-P	Field mustard	cytosol	16.15	30.08
Bra035338.1-P	Field mustard	cytosol	16.02	29.82
Bra030922.1-P	Field mustard	cytosol	16.15	28.17
Bra039688.1-P	Field mustard	cytosol	16.15	28.17
Bra040569.1-P	Field mustard	cytosol	16.02	27.48
Bra002662.1-P	Field mustard	cytosol	14.54	26.73
Bra020378.1-P	Field mustard	cytosol	14.54	26.73
Bra002279.1-P	Field mustard	cytosol	14.67	26.01
Bra006775.1-P	Field mustard	cytosol	13.59	25.83
Bra006529.1-P	Field mustard	cytosol	14.54	25.78
Bra010342.1-P	Field mustard	cytosol	15.34	25.62
Bra011079.1-P	Field mustard	cytosol	15.21	25.51
Bra040214.1-P	Field mustard	cytosol	13.73	24.06
Bra039431.1-P	Field mustard	cytosol	13.73	24.06
Bra001152.1-P	Field mustard	cytosol	13.73	24.06
Bra005733.1-P	Field mustard	cytosol	33.78	22.74
Bra024165.1-P	Field mustard	cytosol	9.69	22.29
Bra007262.1-P	Field mustard	plastid	29.07	22.04
Bra008198.1-P	Field mustard	cytosol	15.34	18.15
Bra009342.1-P	Field mustard	cytosol	23.28	15.43
Bra020079.1-P	Field mustard	cytosol	14.67	15.12
Bra032565.1-P	Field mustard	mitochondrion	25.44	10.14
Bra006530.1-P	Field mustard	cytosol, nucleus, plastid	0.13	0.45

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core
EnsemblPlantsGene:Bra022833	EnsemblPlants:Bra022833.1	EnsemblPlants:Bra022833.1-P	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	UniProt:M4E233	InterPro:P-loop_NTPase	PFAM:PF00004	PRINTS:PR00830	ScanProsite:PS00674
PANTHER:PTHR23077	PANTHER:PTHR23077:SF55	SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI00025402B7	SEG:seg

Description

AT3G01610 (E=2e-229) CDC48C, emb1354 | CDC48C; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding

Coordinates

chrA03:-:7322543..7325426

Molecular Weight (calculated)

81818.1 Da

IEP (calculated)

7.017

GRAVY (calculated)

-0.458

Length

743 amino acids

Sequence
(BLAST)

001: MGRRDVGGRN NSRRDLSRAM DSCGKDLSTA EEIVDALRSC RYGKYERMSR QALVLNVRNV LDARHNNKKR VKEDQEDDDS DEGARGGKMK KQRRKSVSSY
101: SSSEDSGGHI STSEYAKFDL TSECLRGGYA KLNSSTKLAP PPPPPLSGKV GPTFKDFAGI KKVLDELDQY ILSPLLNPPL FGKIGAKPPS GILFHGPPGC
201: GKTRLAHAVA NEAGVPFYQI SATQVLSGVS GESEENIREL FSKAYRTAPS IVFIDEIDAI GSKRENQQRE TEKRIVTQLL TCMDGPPPGD TAAAAGYVVV
301: IGATNTPDAL DPALRRGRRF GREIALTAPD EHARAEILSL VAQRLRLEGS LDMKRIARLT PGFVGADLEE LADMAASLCV KRIMDSRKLQ LSGDSDDGDD
401: RSWLSQPWSD EDLDKLFVRM SDFEEAVKLV KGSLTREGFS TVPDVTWDDV GGLDHLRTEL DDYVVNPIKY ADAFEKFGKK LLETGFLLYG PPGCGKTLVA
501: KAVANEAGAN FIHIKGPELL NKYVGESERA IRTLFQRART SSPCVIFFDE VDALTGRRGR EGDHLVVGGL LNQFLTELHG GDRRDVYVIG ATNRLDVIDG
601: AFLRPGRFAN LVYVPLPNAY ERVSILKSIA KKRPIDPSVD LDAIATKYCE DFSGADLANL MDKAIHVAVK EKIQSSKSSE DGDMNLSDCT IKMTHFKQAL
701: SLVTPSVSKQ QIKHYEEQRD RHHRLQSSTN MDQINVGPSF TFE

Best Arabidopsis Sequence Match ( AT3G01610.2 )
(BLAST)

001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE DEIEKARTKS

Arabidopsis Description

CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.